Variant report

Variant	rs11638829
Chromosome Location	chr15:73850159-73850160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10851862	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11632314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11634549	1.00[AMR][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16957980	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16958010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs55878233	1.00[AMR][1000 genomes]
rs56084520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56100682	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62015511	1.00[AMR][1000 genomes]
rs7168262	1.00[CEU][hapmap]
rs7168736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8039466	1.00[AMR][1000 genomes]
rs9635319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73836200-73850600	Weak transcription	HUVEC	blood vessel
2	chr15:73837000-73860000	Weak transcription	Gastric	stomach
3	chr15:73838200-73850400	Weak transcription	Right Ventricle	heart
4	chr15:73838200-73851000	Weak transcription	Colonic Mucosa	Colon
5	chr15:73843800-73851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:73844800-73850600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
10	chr15:73845600-73850400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:73846000-73850600	Strong transcription	NHDF-Ad	bronchial
12	chr15:73846000-73853400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:73846000-73855800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:73846000-73856200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:73846000-73856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:73846000-73857000	Strong transcription	Stomach Smooth Muscle	stomach
17	chr15:73846200-73850200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:73846200-73850800	Weak transcription	Ovary	ovary
19	chr15:73846200-73851000	Weak transcription	Fetal Brain Male	brain
20	chr15:73846200-73856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:73846400-73850400	Weak transcription	GM12878-XiMat	blood
23	chr15:73846400-73851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:73846400-73854800	Weak transcription	Psoas Muscle	Psoas
25	chr15:73846400-73863200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:73846800-73852200	Strong transcription	Fetal Stomach	stomach
27	chr15:73846800-73854800	Weak transcription	Brain Angular Gyrus	brain
28	chr15:73846800-73855400	Weak transcription	Brain Germinal Matrix	brain
29	chr15:73847000-73850400	Weak transcription	Fetal Lung	lung
30	chr15:73847000-73852200	Strong transcription	Fetal Intestine Small	intestine
31	chr15:73847000-73852200	Strong transcription	HSMMtube	muscle
32	chr15:73847000-73856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:73847000-73856200	Strong transcription	Osteobl	bone
34	chr15:73847000-73856800	Strong transcription	NHEK	skin
35	chr15:73847200-73852200	Strong transcription	Primary T cells from cord blood	blood
36	chr15:73847200-73854800	Weak transcription	Brain Substantia Nigra	brain
37	chr15:73847200-73855400	Weak transcription	Fetal Thymus	thymus
38	chr15:73847400-73850200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:73847400-73852200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:73847400-73855800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:73847400-73856200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:73847400-73856200	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:73847400-73856400	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr15:73847400-73856600	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:73847400-73856600	Strong transcription	Left Ventricle	heart
46	chr15:73847400-73862000	Strong transcription	Fetal Intestine Large	intestine
47	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
48	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr15:73847600-73850400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:73847600-73851000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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