Variant report

Variant	rs11639269
Chromosome Location	chr15:73787676-73787677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10851862	1.00[EUR][1000 genomes]
rs11072422	1.00[EUR][1000 genomes]
rs11072425	1.00[EUR][1000 genomes]
rs11072426	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11632743	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11635553	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11638829	1.00[EUR][1000 genomes]
rs12050665	1.00[EUR][1000 genomes]
rs16957980	1.00[EUR][1000 genomes]
rs16958010	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16958014	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2306463	1.00[EUR][1000 genomes]
rs2306464	1.00[EUR][1000 genomes]
rs56084520	1.00[EUR][1000 genomes]
rs56296045	1.00[EUR][1000 genomes]
rs60401042	1.00[EUR][1000 genomes]
rs7168262	1.00[CEU][hapmap]
rs7168736	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7178269	1.00[EUR][1000 genomes]
rs9635319	1.00[EUR][1000 genomes]
rs9635375	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73787400-73787800	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links