Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73613904..73616034-chr15:73833950..73836830,2	MCF-7	breast:
2	chr15:73833100..73835017-chr15:73835234..73837594,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10851862	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072425	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11072426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11072435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11632314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11638829	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11639269	1.00[EUR][1000 genomes]
rs12050665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16958014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306463	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306464	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56084520	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56296045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60401042	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168262	1.00[CEU][hapmap]
rs7168736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178269	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9635319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9635375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73808200-73847400	Weak transcription	Left Ventricle	heart
2	chr15:73820800-73847600	Weak transcription	Aorta	Aorta
3	chr15:73821200-73846000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:73826800-73847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:73827800-73847600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:73832600-73847600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:73832800-73846200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:73833000-73847600	Weak transcription	Liver	Liver
9	chr15:73833000-73848000	Weak transcription	HMEC	breast
10	chr15:73833200-73847400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:73834600-73847000	Weak transcription	Fetal Intestine Small	intestine
12	chr15:73834600-73847400	Weak transcription	Fetal Intestine Large	intestine
13	chr15:73835000-73844000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:73835000-73848400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:73835400-73848800	Weak transcription	Primary B cells from cord blood	blood

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