Variant report

Variant	rs62015511
Chromosome Location	chr15:73639904-73639905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11072422	1.00[AMR][1000 genomes]
rs11072425	1.00[AMR][1000 genomes]
rs11638829	1.00[AMR][1000 genomes]
rs12050665	1.00[AMR][1000 genomes]
rs35976691	1.00[AMR][1000 genomes]
rs55878233	1.00[AMR][1000 genomes]
rs56100682	1.00[AMR][1000 genomes]
rs56296045	1.00[AMR][1000 genomes]
rs9635319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73630800-73640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:73635200-73646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:73636000-73640600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:73636000-73640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:73636000-73641000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:73636000-73645800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:73636000-73646400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:73636200-73640200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:73636200-73640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:73636200-73644200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:73636200-73644200	Weak transcription	Fetal Brain Female	brain
12	chr15:73636200-73646000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:73636400-73644400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:73636600-73640200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:73637200-73645800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:73638000-73643200	Weak transcription	Right Atrium	heart
17	chr15:73638600-73641400	Enhancers	Fetal Heart	heart
18	chr15:73639200-73644000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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