Variant report

Variant	rs11633714
Chromosome Location	chr15:50142029-50142030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1059850	0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs1059851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11070723	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11070733	0.82[EUR][1000 genomes]
rs11630021	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631995	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11632077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633343	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11633465	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11633470	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11633571	1.00[JPT][hapmap];0.93[MEX][hapmap]
rs11633644	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11633744	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11633759	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11634082	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11634914	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11636769	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639332	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11853881	1.00[JPT][hapmap]
rs12148168	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12372951	0.81[EUR][1000 genomes]
rs12901108	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12902979	0.84[EUR][1000 genomes]
rs12903153	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12903481	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12904017	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12907836	0.95[CEU][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs12909447	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12914231	1.00[JPT][hapmap]
rs12915207	1.00[JPT][hapmap];0.80[MEX][hapmap]
rs13329598	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962994	1.00[JPT][hapmap];0.80[MEX][hapmap]
rs16962999	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17486097	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17486425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17486446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486544	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17486663	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17487811	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2413975	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34404202	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34449112	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34561282	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34751824	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34845057	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35827271	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35899336	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35958858	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4275793	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4347574	1.00[CEU][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs4494482	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs4494483	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs4544192	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs55967655	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61618346	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493383	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs66809683	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71469605	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7170482	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7172553	1.00[ASN][1000 genomes]
rs7172585	0.80[EUR][1000 genomes]
rs72733056	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7497350	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8023895	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8025533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031452	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8036570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038434	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs8041979	0.95[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs8042458	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50135200-50181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:50135800-50187400	Weak transcription	Liver	Liver
3	chr15:50136600-50149000	Weak transcription	Placenta	Placenta
4	chr15:50138000-50146800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:50138200-50142600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:50138200-50145200	Strong transcription	Primary hematopoietic stem cells	blood
7	chr15:50138200-50189800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:50138800-50142200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:50138800-50142400	Enhancers	Hela-S3	cervix
10	chr15:50139000-50142400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:50139200-50142200	Enhancers	NH-A	brain
12	chr15:50140200-50142400	Enhancers	Osteobl	bone
13	chr15:50140200-50155600	Weak transcription	Ovary	ovary
14	chr15:50140800-50143800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:50141200-50142200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:50141200-50143600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:50141200-50148000	Weak transcription	Aorta	Aorta
18	chr15:50141200-50151600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:50141400-50147200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:50141400-50151200	Weak transcription	HSMM	muscle
21	chr15:50141600-50142400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:50141600-50145000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:50142000-50142200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:50142000-50145000	Weak transcription	NHDF-Ad	bronchial

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