Variant report

Variant	rs35958858
Chromosome Location	chr15:50125685-50125686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1059851	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1059852	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11070723	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630021	0.81[EUR][1000 genomes]
rs11631995	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632077	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11632116	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11633343	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633465	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11633470	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11633644	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633714	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11633744	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11633759	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11634082	0.83[EUR][1000 genomes]
rs11634914	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11636769	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11639332	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12372951	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901108	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902979	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903153	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12903481	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904017	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907836	0.81[EUR][1000 genomes]
rs12909447	0.87[EUR][1000 genomes]
rs13329598	0.82[EUR][1000 genomes]
rs17486097	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486425	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17486446	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17486544	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17486663	0.81[EUR][1000 genomes]
rs1873810	1.00[ASN][1000 genomes]
rs34404202	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34449112	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561282	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34751824	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34845057	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35827271	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35899336	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4275793	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4347574	0.81[EUR][1000 genomes]
rs4494482	0.86[EUR][1000 genomes]
rs4494483	0.86[EUR][1000 genomes]
rs4544192	0.86[EUR][1000 genomes]
rs542526	1.00[ASN][1000 genomes]
rs549739	1.00[ASN][1000 genomes]
rs55967655	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598572	1.00[ASN][1000 genomes]
rs61618346	0.85[EUR][1000 genomes]
rs628853	1.00[ASN][1000 genomes]
rs628868	1.00[ASN][1000 genomes]
rs66809683	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71469605	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733056	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8023895	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025533	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8036570	0.85[EUR][1000 genomes]
rs8041979	0.81[EUR][1000 genomes]
rs8042458	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50120200-50126000	Weak transcription	Psoas Muscle	Psoas
2	chr15:50124000-50130200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:50124400-50130200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:50124800-50134400	Weak transcription	Adipose Nuclei	Adipose
5	chr15:50124800-50139200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:50125200-50130000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links