Variant report

Variant	rs12903481
Chromosome Location	chr15:50097453-50097454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50092819..50094649-chr15:50096993..50098601,2	MCF-7	breast:
2	chr15:50097374..50099076-chr15:50108768..50110435,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1059851	0.83[EUR][1000 genomes]
rs1059852	0.83[EUR][1000 genomes]
rs11070723	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631995	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632077	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11632116	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11633343	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633465	0.81[EUR][1000 genomes]
rs11633470	0.81[EUR][1000 genomes]
rs11633644	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633714	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11633744	0.84[EUR][1000 genomes]
rs11633759	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11634914	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11636769	0.86[EUR][1000 genomes]
rs11639332	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148168	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12372951	1.00[ASN][1000 genomes]
rs12901108	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902979	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903153	0.86[EUR][1000 genomes]
rs12904017	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909447	0.81[EUR][1000 genomes]
rs17486097	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486425	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17486446	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17486544	0.86[EUR][1000 genomes]
rs1873810	1.00[ASN][1000 genomes]
rs34404202	0.85[EUR][1000 genomes]
rs34449112	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561282	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34751824	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35827271	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35899336	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35958858	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4275793	0.83[EUR][1000 genomes]
rs542526	1.00[ASN][1000 genomes]
rs549739	1.00[ASN][1000 genomes]
rs55967655	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598572	1.00[ASN][1000 genomes]
rs628853	1.00[ASN][1000 genomes]
rs628868	1.00[ASN][1000 genomes]
rs692391	0.81[EUR][1000 genomes]
rs71469605	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733056	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8023895	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025533	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1528	chr15:50067958-50112958	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1047047	chr15:50070224-50125096	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1042311	chr15:50083175-50125096	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2761888	chr15:50083187-50125108	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542381	chr15:50086150-50115876	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50097400-50097800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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