Variant report

Variant	rs11633952
Chromosome Location	chr15:57057252-57057253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10518877	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10851610	0.80[EUR][1000 genomes]
rs11637132	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3199	1.00[CHB][hapmap]
rs55888506	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57052200-57057800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:57052400-57059800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr15:57052600-57057600	Weak transcription	Placenta	Placenta
4	chr15:57053200-57057400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:57053200-57057400	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:57053200-57057400	Weak transcription	HMEC	breast
7	chr15:57053200-57057400	Weak transcription	NHDF-Ad	bronchial
8	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:57053400-57057400	Weak transcription	NHEK	skin
10	chr15:57054800-57058000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:57055000-57057800	Enhancers	Adipose Nuclei	Adipose
12	chr15:57055400-57058000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:57055400-57058000	Enhancers	Fetal Lung	lung
14	chr15:57055400-57058000	Enhancers	Fetal Stomach	stomach
15	chr15:57055400-57058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:57055400-57060200	Enhancers	HUVEC	blood vessel
17	chr15:57055600-57058000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:57055800-57057800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:57055800-57058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:57056400-57057800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:57056400-57058000	Enhancers	Fetal Brain Male	brain
22	chr15:57056400-57059400	Enhancers	Dnd41	blood
23	chr15:57056600-57057600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:57056600-57057600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:57056800-57057400	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:57056800-57057800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:57056800-57066400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:57057000-57057600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr15:57057000-57057800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:57057000-57057800	Enhancers	Primary hematopoietic stem cells	blood
31	chr15:57057000-57057800	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:57057000-57057800	Enhancers	GM12878-XiMat	blood
33	chr15:57057000-57057800	Enhancers	NH-A	brain
34	chr15:57057000-57058000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:57057000-57058000	Enhancers	Fetal Thymus	thymus
36	chr15:57057000-57058000	Enhancers	Thymus	Thymus
37	chr15:57057200-57057400	Enhancers	Primary B cells from cord blood	blood
38	chr15:57057200-57057800	Enhancers	HSMMtube	muscle
39	chr15:57057200-57057800	Enhancers	NHLF	lung
40	chr15:57057200-57057800	Enhancers	Osteobl	bone
41	chr15:57057200-57058000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:57057200-57058000	Enhancers	Primary T cells from cord blood	blood
43	chr15:57057200-57058000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:57057200-57058000	Enhancers	HSMM	muscle
45	chr15:57057200-57058200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links