Variant report

Variant	rs10851610
Chromosome Location	chr15:56905983-56905984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11071282	0.82[JPT][hapmap]
rs11071283	0.82[JPT][hapmap]
rs11633952	0.80[EUR][1000 genomes]
rs11634704	0.82[ASN][1000 genomes]
rs11637132	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs12441674	0.82[JPT][hapmap]
rs1680488	0.82[JPT][hapmap]
rs2128172	0.82[JPT][hapmap]
rs28678122	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs4774891	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs534005	0.82[JPT][hapmap]
rs55888506	0.94[EUR][1000 genomes]
rs7182346	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs8031966	0.82[JPT][hapmap]
rs809459	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
2	chr15:56903800-56907800	Enhancers	Fetal Thymus	thymus
3	chr15:56905600-56923600	Weak transcription	Left Ventricle	heart
4	chr15:56905800-56906000	Active TSS	Thymus	Thymus
5	chr15:56905800-56907200	Flanking Active TSS	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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