Variant report

Variant	rs55888506
Chromosome Location	chr15:56918510-56918511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56917635..56921427-chr15:56927858..56931559,3	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10518877	0.83[ASN][1000 genomes]
rs10851610	0.94[EUR][1000 genomes]
rs11633952	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11637132	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3199	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
2	chr15:56905600-56923600	Weak transcription	Left Ventricle	heart
3	chr15:56908800-56923400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:56910600-56945400	Weak transcription	HSMMtube	muscle
5	chr15:56912800-56921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:56912800-56923400	Weak transcription	Adipose Nuclei	Adipose
7	chr15:56912800-56923400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:56912800-56957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:56913000-56923400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:56913200-56923200	Weak transcription	HSMM	muscle
11	chr15:56913200-56923600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:56913200-56929600	Weak transcription	NHDF-Ad	bronchial
13	chr15:56913400-56923600	Weak transcription	Dnd41	blood
14	chr15:56913400-56955200	Weak transcription	Aorta	Aorta
15	chr15:56914000-56921000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:56914000-56929400	Weak transcription	Fetal Stomach	stomach
17	chr15:56914200-56921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:56915200-56937400	Weak transcription	Liver	Liver
19	chr15:56915400-56923600	Weak transcription	Primary T cells from cord blood	blood
20	chr15:56915600-56929000	Weak transcription	Thymus	Thymus
21	chr15:56916600-56990800	Weak transcription	Pancreas	Pancrea
22	chr15:56916800-56949800	Weak transcription	Fetal Kidney	kidney
23	chr15:56917000-56918800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:56917200-56955200	Weak transcription	Psoas Muscle	Psoas
25	chr15:56917600-56921400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:56917600-56923600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:56917600-56944800	Weak transcription	Fetal Brain Male	brain
28	chr15:56917600-56957000	Weak transcription	Brain Anterior Caudate	brain
29	chr15:56917800-56923200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:56917800-56923200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:56917800-56923400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:56917800-56923400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:56917800-56923400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:56917800-56923600	Weak transcription	Primary B cells from cord blood	blood
35	chr15:56917800-56938200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:56917800-56945400	Weak transcription	GM12878-XiMat	blood
37	chr15:56917800-56955800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:56917800-56956800	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:56917800-56959800	Weak transcription	Brain Angular Gyrus	brain
40	chr15:56917800-56990600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:56917800-56990600	Weak transcription	NHLF	lung
42	chr15:56918000-56921200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr15:56918000-56923600	Weak transcription	Brain Hippocampus Middle	brain
44	chr15:56918000-56923600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:56918000-56923600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:56918000-56923600	Weak transcription	Fetal Lung	lung
47	chr15:56918000-56923600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:56918000-56945200	Weak transcription	A549	lung
49	chr15:56918000-56945600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:56918200-56923600	Weak transcription	Fetal Muscle Leg	muscle

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