Variant report

Variant	rs11634171
Chromosome Location	chr15:60331307-60331308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12898517	0.88[ASN][1000 genomes]
rs12917568	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs143831	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17302895	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414659	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28630637	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775232	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4775233	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7166263	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7174372	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7174491	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8032252	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs8032588	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs8039361	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv569607	chr15:60303749-60347452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1043235	chr15:60318001-60350625	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044105	chr15:60318001-60354519	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1038620	chr15:60319463-60349494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv542404	chr15:60319463-60349494	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045741	chr15:60323323-60350625	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60329200-60332200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr15:60329800-60332200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr15:60330200-60334400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:60330600-60331800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:60330600-60334800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr15:60330600-60335600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:60330600-60336400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:60330800-60331800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:60330800-60333000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:60331000-60331400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:60331000-60331400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:60331200-60331600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:60331200-60332000	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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