Variant report

Variant	rs28630637
Chromosome Location	chr15:60313607-60313608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11634171	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12898517	0.87[ASN][1000 genomes]
rs143831	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17302895	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2414659	0.88[EUR][1000 genomes]
rs4775232	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775233	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6494159	0.80[EUR][1000 genomes]
rs7166263	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7174372	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7174491	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8039361	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv569607	chr15:60303749-60347452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60299000-60314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:60306400-60314200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:60312600-60314800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:60312800-60315200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:60312800-60315200	Enhancers	NHEK	skin
6	chr15:60313000-60314600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:60313000-60314600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:60313000-60314600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:60313000-60314800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:60313000-60314800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:60313000-60314800	Enhancers	HMEC	breast
12	chr15:60313000-60315800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:60313200-60313800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:60313200-60314200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:60313200-60314600	Enhancers	Primary hematopoietic stem cells	blood
16	chr15:60313200-60314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:60313200-60315200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr15:60313200-60315200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:60313200-60315800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:60313600-60314600	Enhancers	Placenta	Placenta
21	chr15:60313600-60314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:60313600-60314800	Enhancers	Dnd41	blood

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