Variant report

Variant	rs2414659
Chromosome Location	chr15:60351554-60351555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11634171	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12898517	0.80[EUR][1000 genomes]
rs12917568	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs143831	0.89[EUR][1000 genomes]
rs17302895	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28630637	0.88[EUR][1000 genomes]
rs4775232	0.85[EUR][1000 genomes]
rs4775233	0.87[EUR][1000 genomes]
rs7174372	0.85[EUR][1000 genomes]
rs7174491	0.86[EUR][1000 genomes]
rs8032252	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs8032588	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs8039361	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044105	chr15:60318001-60354519	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60351200-60351800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:60351200-60351800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:60351200-60352000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:60351200-60352000	Enhancers	HMEC	breast
5	chr15:60351200-60352000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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