Variant report

Variant	rs11634582
Chromosome Location	chr15:41896257-41896258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41849654..41850457-chr15:41895745..41896286,2	MCF-7	breast:
2	chr15:41849464..41850405-chr15:41895722..41896405,2	K562	blood:
3	chr15:41895868..41896605-chr15:41952289..41953189,2	MCF-7	breast:
4	chr15:41894665..41896656-chr15:41956346..41957868,2	K562	blood:
5	chr15:41895763..41896358-chr15:42103332..42103836,2	MCF-7	breast:
6	chr15:41853024..41855719-chr15:41894877..41896959,2	K562	blood:
7	chr15:41895978..41896965-chr15:42196438..42197404,2	MCF-7	breast:
8	chr15:41895685..41897550-chr15:41949575..41953592,3	K562	blood:
9	chr15:41894850..41897791-chr15:41952425..41954707,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000092445	Chromatin interaction
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11630209	0.85[EUR][1000 genomes]
rs11630972	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11634804	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11636523	1.00[JPT][hapmap]
rs1197671	1.00[JPT][hapmap]
rs1197705	1.00[JPT][hapmap]
rs12902047	1.00[ASN][1000 genomes]
rs12906666	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs12914573	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917387	1.00[JPT][hapmap]
rs17676332	1.00[JPT][hapmap]
rs17677098	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs17677757	1.00[JPT][hapmap]
rs17678310	1.00[JPT][hapmap]
rs2178003	0.83[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2925339	1.00[JPT][hapmap]
rs34040639	1.00[JPT][hapmap]
rs34802546	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35698486	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57359439	0.86[ASN][1000 genomes]
rs60526934	1.00[ASN][1000 genomes]
rs62003878	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66593163	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167078	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7183061	1.00[ASN][1000 genomes]
rs8042809	1.00[JPT][hapmap]
rs9646193	0.83[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41893400-41896400	Weak transcription	Fetal Kidney	kidney
2	chr15:41895800-41896400	Enhancers	Esophagus	oesophagus
3	chr15:41895800-41896600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr15:41895800-41896800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:41895800-41896800	Enhancers	Spleen	Spleen
6	chr15:41895800-41897000	Enhancers	Dnd41	blood
7	chr15:41896000-41896400	Enhancers	Small Intestine	intestine
8	chr15:41896000-41896400	Flanking Active TSS	NHLF	lung
9	chr15:41896000-41896400	Active TSS	Osteobl	bone
10	chr15:41896000-41896600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:41896000-41896600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr15:41896000-41896600	Enhancers	Fetal Brain Male	brain
13	chr15:41896000-41896800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:41896000-41896800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr15:41896000-41896800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:41896000-41896800	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr15:41896000-41896800	Enhancers	Ovary	ovary
18	chr15:41896000-41897000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:41896000-41897200	Enhancers	Placenta	Placenta
20	chr15:41896200-41896400	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr15:41896200-41896400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr15:41896200-41896400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr15:41896200-41896400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:41896200-41896400	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr15:41896200-41896400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:41896200-41896400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
27	chr15:41896200-41896400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:41896200-41896400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:41896200-41896400	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr15:41896200-41896400	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr15:41896200-41896400	Active TSS	Brain Substantia Nigra	brain
32	chr15:41896200-41896400	Flanking Active TSS	Fetal Heart	heart
33	chr15:41896200-41896400	Active TSS	Fetal Lung	lung
34	chr15:41896200-41896400	Flanking Active TSS	Fetal Stomach	stomach
35	chr15:41896200-41896400	Enhancers	Gastric	stomach
36	chr15:41896200-41896400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr15:41896200-41896400	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr15:41896200-41896600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:41896200-41896600	Enhancers	H9 Cell Line	embryonic stem cell
40	chr15:41896200-41896600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:41896200-41896600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:41896200-41896600	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr15:41896200-41896600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr15:41896200-41896600	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr15:41896200-41896600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr15:41896200-41896600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr15:41896200-41896600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
48	chr15:41896200-41896600	Enhancers	Primary hematopoietic stem cells	blood
49	chr15:41896200-41896600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr15:41896200-41896600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links