Variant report

Variant	rs7183061
Chromosome Location	chr15:41941469-41941470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11630209	0.84[EUR][1000 genomes]
rs11634582	1.00[ASN][1000 genomes]
rs12902047	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914573	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17733703	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34802546	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35698486	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57359439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60526934	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003878	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66593163	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41925000-41952200	Weak transcription	Ovary	ovary
2	chr15:41927000-41951800	Weak transcription	Hela-S3	cervix
3	chr15:41933200-41945000	Weak transcription	Right Atrium	heart
4	chr15:41939000-41942000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:41939200-41941800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:41939600-41941800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:41940000-41942800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:41940000-41947800	Weak transcription	Dnd41	blood
9	chr15:41940600-41942000	Weak transcription	A549	lung
10	chr15:41940800-41941600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:41940800-41941600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:41940800-41941600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:41941000-41951400	Weak transcription	Fetal Kidney	kidney
14	chr15:41941200-41952000	Weak transcription	HSMM	muscle
15	chr15:41941400-41941600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:41941400-41941600	Enhancers	Osteobl	bone
17	chr15:41941400-41941800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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