Variant report

Variant	rs17733703
Chromosome Location	chr15:41942433-41942434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1122884	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11630209	0.84[EUR][1000 genomes]
rs11630972	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs11631051	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs11632519	1.00[JPT][hapmap]
rs11634083	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11634582	1.00[JPT][hapmap]
rs11634804	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs11636523	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1197667	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1197669	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1197671	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs1197672	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs1197703	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1197705	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs12148570	0.83[AFR][1000 genomes]
rs12902047	0.88[EUR][1000 genomes]
rs12906666	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12914573	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12917387	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17676332	1.00[JPT][hapmap]
rs17677098	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs17677757	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs17678310	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs2178003	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs2925339	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs34040639	1.00[JPT][hapmap]
rs34802546	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35698486	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57359439	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60526934	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62003878	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66593163	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7167078	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs7175318	0.80[AFR][1000 genomes]
rs7183061	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040094	0.82[AFR][1000 genomes]
rs8042809	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9646193	0.96[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41925000-41952200	Weak transcription	Ovary	ovary
2	chr15:41927000-41951800	Weak transcription	Hela-S3	cervix
3	chr15:41933200-41945000	Weak transcription	Right Atrium	heart
4	chr15:41940000-41942800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:41940000-41947800	Weak transcription	Dnd41	blood
6	chr15:41941000-41951400	Weak transcription	Fetal Kidney	kidney
7	chr15:41941200-41952000	Weak transcription	HSMM	muscle
8	chr15:41941600-41947200	Weak transcription	Osteobl	bone
9	chr15:41941600-41952000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:41941600-41952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:41941800-41943000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:41941800-41947600	Weak transcription	NH-A	brain
13	chr15:41942000-41942600	Strong transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links