Variant report

Variant	rs7175318
Chromosome Location	chr15:41982978-41982979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr15:41982965-41983012	MCF10A-Er-Src	breast:	n/a	chr15:41982996-41983007
2	CEBPB	chr15:41982880-41983156	HepG2	liver:	n/a	chr15:41983027-41983038
3	STAT3	chr15:41982895-41983128	Hela-S3	cervix:	n/a	chr15:41982996-41983007
4	STAT5A	chr15:41982785-41983152	K562	blood:	n/a	n/a
5	CEBPB	chr15:41982830-41983209	K562	blood:	n/a	chr15:41983027-41983038
6	STAT3	chr15:41982869-41983191	MCF10A-Er-Src	breast:	n/a	chr15:41982996-41983007
7	TEAD4	chr15:41982767-41983223	K562	blood:	n/a	n/a
8	EP300	chr15:41982916-41983191	K562	blood:	n/a	n/a
9	CEBPB	chr15:41982896-41983179	HepG2	liver:	n/a	chr15:41983027-41983038
10	TBL1XR1	chr15:41982942-41983116	K562	blood:	n/a	n/a
11	CEBPB	chr15:41982899-41983189	K562	blood:	n/a	chr15:41983027-41983038
12	RCOR1	chr15:41982897-41983177	K562	blood:	n/a	n/a
13	ARID3A	chr15:41982942-41983062	K562	blood:	n/a	n/a
14	JUND	chr15:41982879-41983114	K562	blood:	n/a	n/a
15	CEBPB	chr15:41982905-41983105	Hela-S3	cervix:	n/a	chr15:41983027-41983038
16	CEBPB	chr15:41981848-41983220	K562	blood:	n/a	chr15:41982196-41982207 chr15:41983027-41983038
17	ZNF384	chr15:41982822-41983305	K562	blood:	n/a	n/a
18	STAT3	chr15:41982875-41983086	MCF10A-Er-Src	breast:	n/a	chr15:41982996-41983007
19	RFX5	chr15:41982881-41983096	HepG2	liver:	n/a	n/a
20	STAT5A	chr15:41982855-41983220	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:41982969-41983019	PANC-1	pancreas:	n/a
2	chr15:41982969-41983019	AG09309	skin:	n/a
3	chr15:41982969-41983019	HCT-116	colon:	n/a
4	chr15:41982969-41983019	HRPEpiC	eye:	n/a
5	chr15:41982969-41983019	NH-A	brain:	n/a
6	chr15:41982969-41983019	HNPCEpiC	eye:	n/a
7	chr15:41982969-41983019	NB4	blood:	n/a
8	chr15:41982969-41983019	U87	brain:	n/a
9	chr15:41982969-41983019	BE2_C	brain:	n/a
10	chr15:41982969-41983019	Hela-S3	cervix:	n/a
11	chr15:41982969-41983019	PrEC	prostate:	n/a
12	chr15:41982969-41983019	SK-N-SH	brain:	n/a
13	chr15:41982969-41983019	NHBE	bronchial:	n/a
14	chr15:41982969-41983019	Hepatocyte	liver:	n/a
15	chr15:41982969-41983019	GM19239	blood:	n/a
16	chr15:41982969-41983019	HRE	kidney:	n/a
17	chr15:41982969-41983019	AG09319	gingival:	n/a
18	chr15:41982969-41983019	HAEpiC	amniotic membrane:	n/a
19	chr15:41982969-41983019	AG04449	skin:	fetal
20	chr15:41982969-41983019	Caco-2	colon:	n/a
21	chr15:41982969-41983019	H1-hESC	embryonic stem cell:	embryo
22	chr15:41982969-41983019	GM12891	blood:	n/a
23	chr15:41982969-41983019	IMR90	lung:	fetal
24	chr15:41982969-41983019	GM12892	blood:	n/a
25	chr15:41982969-41983019	RPTEC	kidney:	n/a
26	chr15:41982969-41983019	HL-60	blood:	n/a
27	chr15:41982969-41983019	K562	blood:	n/a
28	chr15:41982969-41983019	BJ	skin:	n/a
29	chr15:41982969-41983019	HCM	heart:	n/a
30	chr15:41982969-41983019	HMEC	breast:	n/a
31	chr15:41982969-41983019	HRCEpiC	kidney:	n/a
32	chr15:41982969-41983019	GM06990	blood:	n/a
33	chr15:41982969-41983019	SK-N-MC	brain:	n/a
34	chr15:41982969-41983019	LNCaP	prostate:	n/a
35	chr15:41982969-41983019	Jurkat	blood:	n/a
36	chr15:41982969-41983019	AG04450	lung:	fetal
37	chr15:41982969-41983019	HEK293	kidney:	embryo
38	chr15:41982969-41983019	SKMC	muscle:	n/a
39	chr15:41982969-41983019	NHDF-neo	bronchial:	n/a
40	chr15:41982969-41983019	HEEpiC	esophagus:	n/a
41	chr15:41982969-41983019	HUVEC	blood vessel:	n/a
42	chr15:41982969-41983019	PFSK-1	brain:	n/a
43	chr15:41982969-41983019	AoSMC	blood vessel:	n/a
44	chr15:41982969-41983019	HIPEpiC	eye:	n/a
45	chr15:41982969-41983019	SAEC	small airway:	n/a
46	chr15:41982969-41983019	HPAEpiC	pulmonary alveolar:	n/a
47	chr15:41982969-41983019	GM12878	blood:	n/a
48	chr15:41982969-41983019	NT2-D1	testis:	n/a
49	chr15:41982969-41983019	HCF	heart:	n/a
50	chr15:41982969-41983019	ECC-1	luminal epithelium:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41973132..41976112-chr15:41981516..41983125,2	K562	blood:

No data

Variant related genes	Relation type
MIR626	TF binding region
MIR626	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11630972	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633160	0.87[EUR][1000 genomes]
rs11634804	0.82[EUR][1000 genomes]
rs11636523	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1197671	0.80[EUR][1000 genomes]
rs12148570	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906666	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12917387	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677098	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677757	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17678310	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17733703	0.80[AFR][1000 genomes]
rs2178003	0.87[EUR][1000 genomes]
rs34621600	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35665813	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714979	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61104950	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003901	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167078	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040094	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042809	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9646193	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41954600-41983800	Weak transcription	Thymus	Thymus
2	chr15:41954600-42001000	Weak transcription	Colonic Mucosa	Colon
3	chr15:41955000-41988200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41959400-41988600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:41959400-41989000	Weak transcription	NHDF-Ad	bronchial
6	chr15:41961800-41990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:41962000-41983800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:41962000-41988400	Weak transcription	Adipose Nuclei	Adipose
9	chr15:41962000-41990800	Weak transcription	NH-A	brain
10	chr15:41962000-41991200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:41962000-42001400	Weak transcription	Gastric	stomach
12	chr15:41962200-41984400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:41962200-42001000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:41962600-41983400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:41962600-41983600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:41962600-41984000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:41962600-41988400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:41963400-41988400	Weak transcription	Placenta	Placenta
19	chr15:41963600-41987800	Weak transcription	Primary B cells from cord blood	blood
20	chr15:41964800-41983800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:41966600-41984400	Weak transcription	Left Ventricle	heart
22	chr15:41966600-41988400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:41968800-41988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:41971600-41983600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:41971600-41988200	Weak transcription	Fetal Thymus	thymus
26	chr15:41971600-41997400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:41972000-41989600	Weak transcription	Fetal Intestine Small	intestine
28	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr15:41972800-41999600	Weak transcription	Fetal Brain Female	brain
30	chr15:41973200-41988400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:41975800-41988400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:41976000-41988000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:41976800-41983800	Weak transcription	Fetal Heart	heart
34	chr15:41976800-41988200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:41978400-41985000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr15:41978800-41984200	Weak transcription	Pancreas	Pancrea
37	chr15:41978800-41985000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr15:41978800-41991200	Weak transcription	Liver	Liver
39	chr15:41979000-41983200	Enhancers	Brain Hippocampus Middle	brain
40	chr15:41979400-41984000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:41979400-41984000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:41980000-41984800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:41980600-41984600	Enhancers	Dnd41	blood
44	chr15:41980600-41984800	Enhancers	K562	blood
45	chr15:41980600-41985000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr15:41980600-41987400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr15:41980600-41988200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:41980800-41988400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:41981000-41983600	Weak transcription	HUVEC	blood vessel
50	chr15:41981000-41984800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links