Variant report

Variant	rs62003901
Chromosome Location	chr15:41957750-41957751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41957744-41957781	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41894665..41896656-chr15:41956346..41957868,2	K562	blood:

Variant related genes	Relation type
MGA	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11630972	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633160	0.85[EUR][1000 genomes]
rs11634804	0.81[EUR][1000 genomes]
rs11636523	0.82[EUR][1000 genomes]
rs1197671	0.81[EUR][1000 genomes]
rs12148570	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906666	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12917387	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677098	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677757	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17678310	0.83[EUR][1000 genomes]
rs2178003	0.85[EUR][1000 genomes]
rs34621600	0.95[EUR][1000 genomes]
rs35665813	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714979	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60526934	0.81[AFR][1000 genomes]
rs61104950	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167078	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175318	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040094	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042809	0.83[EUR][1000 genomes]
rs9646193	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41954200-41962600	Weak transcription	Spleen	Spleen
2	chr15:41954400-41961600	Weak transcription	Gastric	stomach
3	chr15:41954400-41964600	Weak transcription	Lung	lung
4	chr15:41954400-41970600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:41954400-41978600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:41954400-41982800	Weak transcription	Small Intestine	intestine
7	chr15:41954600-41958200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:41954600-41958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:41954600-41958400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:41954600-41958600	Weak transcription	NHLF	lung
11	chr15:41954600-41958800	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:41954600-41960400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:41954600-41961000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:41954600-41961000	Weak transcription	Fetal Thymus	thymus
15	chr15:41954600-41961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:41954600-41961200	Weak transcription	Aorta	Aorta
17	chr15:41954600-41961200	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:41954600-41961400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:41954600-41961400	Weak transcription	Ovary	ovary
20	chr15:41954600-41961600	Weak transcription	Esophagus	oesophagus
21	chr15:41954600-41961600	Weak transcription	Placenta	Placenta
22	chr15:41954600-41961600	Weak transcription	Right Atrium	heart
23	chr15:41954600-41961600	Weak transcription	Right Ventricle	heart
24	chr15:41954600-41961800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:41954600-41964000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:41954600-41964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:41954600-41964200	Weak transcription	Fetal Stomach	stomach
28	chr15:41954600-41964800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:41954600-41965600	Weak transcription	Left Ventricle	heart
30	chr15:41954600-41976200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:41954600-41983800	Weak transcription	Thymus	Thymus
32	chr15:41954600-42001000	Weak transcription	Colonic Mucosa	Colon
33	chr15:41954800-41958200	Weak transcription	NH-A	brain
34	chr15:41954800-41958400	Weak transcription	HSMM	muscle
35	chr15:41954800-41958400	Weak transcription	NHDF-Ad	bronchial
36	chr15:41954800-41958400	Weak transcription	NHEK	skin
37	chr15:41954800-41958400	Weak transcription	Osteobl	bone
38	chr15:41954800-41958600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:41954800-41958800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:41954800-41960000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:41954800-41961000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:41954800-41961000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:41954800-41961000	Weak transcription	Primary T cells from cord blood	blood
44	chr15:41954800-41961200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr15:41954800-41961200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:41954800-41961200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:41954800-41961200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr15:41954800-41961200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:41954800-41961200	Weak transcription	Adipose Nuclei	Adipose
50	chr15:41954800-41961200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links