Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41947183..41950563-chr15:41951272..41954029,4	MCF-7	breast:
2	chr15:41945176..41947724-chr15:41947900..41950145,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11630972	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633160	0.84[EUR][1000 genomes]
rs11636523	0.81[EUR][1000 genomes]
rs1197671	0.80[EUR][1000 genomes]
rs12148570	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906666	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12917387	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677098	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677757	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17678310	0.82[EUR][1000 genomes]
rs2178003	0.84[EUR][1000 genomes]
rs34621600	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35714979	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61104950	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003901	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167078	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175318	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040094	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042809	0.82[EUR][1000 genomes]
rs9646193	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41925000-41952200	Weak transcription	Ovary	ovary
2	chr15:41927000-41951800	Weak transcription	Hela-S3	cervix
3	chr15:41940000-41947800	Weak transcription	Dnd41	blood
4	chr15:41941000-41951400	Weak transcription	Fetal Kidney	kidney
5	chr15:41941200-41952000	Weak transcription	HSMM	muscle
6	chr15:41941600-41952000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:41941600-41952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:41941800-41947600	Weak transcription	NH-A	brain
9	chr15:41943400-41952000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:41944800-41948400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:41946400-41947400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:41946400-41951400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:41946400-41952000	Weak transcription	Spleen	Spleen
14	chr15:41946800-41948400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:41947200-41947400	Enhancers	Fetal Brain Female	brain
16	chr15:41947200-41948600	Enhancers	Osteobl	bone
17	chr15:41947200-41951800	Weak transcription	Fetal Intestine Small	intestine

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