Variant report

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11630209	0.86[EUR][1000 genomes]
rs11634582	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902047	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17733703	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34802546	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35698486	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57359439	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60526934	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003878	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66593163	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183061	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41913800-41939400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:41914200-41924600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41914200-41935800	Weak transcription	Gastric	stomach
4	chr15:41914400-41925800	Weak transcription	Lung	lung
5	chr15:41914600-41922800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:41914600-41924400	Weak transcription	Ovary	ovary
7	chr15:41914600-41924600	Weak transcription	Left Ventricle	heart
8	chr15:41915000-41921600	Weak transcription	Psoas Muscle	Psoas
9	chr15:41915000-41921600	Weak transcription	NHDF-Ad	bronchial
10	chr15:41915000-41922000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:41915000-41924200	Weak transcription	Brain Anterior Caudate	brain
12	chr15:41915000-41924600	Weak transcription	Right Atrium	heart
13	chr15:41915000-41926000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:41915000-41927400	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:41915200-41922200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:41915200-41924400	Weak transcription	Brain Substantia Nigra	brain
17	chr15:41915600-41921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:41917400-41921600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:41917400-41922400	Weak transcription	Fetal Intestine Small	intestine
20	chr15:41917800-41926200	Weak transcription	Hela-S3	cervix

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