Variant report

Variant	rs11634955
Chromosome Location	chr15:51963263-51963264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10467923	0.89[GIH][hapmap]
rs10519313	0.84[CHB][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap]
rs10851502	0.87[YRI][hapmap]
rs11070857	0.86[GIH][hapmap]
rs11070859	0.81[YRI][hapmap]
rs11070863	0.97[ASN][1000 genomes]
rs11631725	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11633713	0.81[CHB][hapmap]
rs11634180	0.82[YRI][hapmap]
rs11635216	0.89[GIH][hapmap]
rs11637716	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11638106	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11638154	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12372948	0.86[GIH][hapmap]
rs12440990	0.88[YRI][hapmap]
rs1456299	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1456300	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2054166	0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2124592	0.81[CHB][hapmap];0.81[YRI][hapmap]
rs2124875	0.88[YRI][hapmap]
rs2168474	0.83[ASN][1000 genomes]
rs2278989	0.84[CHB][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap]
rs2278990	0.84[CHB][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap]
rs2305708	0.81[CHB][hapmap]
rs2305716	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414105	0.89[GIH][hapmap]
rs2414106	0.89[GIH][hapmap];0.84[MEX][hapmap]
rs2414109	0.89[GIH][hapmap];0.84[MEX][hapmap]
rs2414111	0.91[GIH][hapmap]
rs2607119	0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2622775	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2652594	0.86[JPT][hapmap]
rs28576876	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2899477	0.82[ASN][1000 genomes]
rs4774597	0.84[YRI][hapmap]
rs4775943	0.87[YRI][hapmap]
rs4775953	0.89[GIH][hapmap];0.84[MEX][hapmap]
rs4775955	0.84[GIH][hapmap];0.80[MEX][hapmap]
rs4775960	0.86[GIH][hapmap];0.84[MEX][hapmap]
rs4775961	0.86[GIH][hapmap];0.84[MEX][hapmap]
rs4775968	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55982453	0.99[ASN][1000 genomes]
rs60060794	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6493505	0.81[YRI][hapmap]
rs7167760	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs7168749	0.95[ASN][1000 genomes]
rs7170217	0.84[YRI][hapmap]
rs7170444	0.82[YRI][hapmap]
rs7170980	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs7171884	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs7174495	0.87[YRI][hapmap]
rs7177720	0.86[GIH][hapmap];0.84[MEX][hapmap]
rs7183479	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs744039	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs750162	0.80[CHB][hapmap]
rs8023455	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8033234	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs8034197	0.97[ASN][1000 genomes]
rs8037167	0.84[CHB][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap]
rs8037340	0.97[ASN][1000 genomes]
rs8042221	0.88[GIH][hapmap]
rs8042840	0.84[CHB][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap]
rs9744054	0.81[ASN][1000 genomes]
rs9944241	0.89[GIH][hapmap];0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11634955	DMXL2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51960600-51964200	Enhancers	K562	blood
2	chr15:51963200-51963800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr15:51963200-51964200	Enhancers	Monocytes-CD14+_RO01746	blood

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