Variant report
Variant | rs8033234 |
---|---|
Chromosome Location | chr15:51956117-51956118 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:51955426..51957385-chr15:51970284..51973757,3 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000104112 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10519313 | 0.83[CHB][hapmap] |
rs11070863 | 0.97[ASN][1000 genomes] |
rs11631725 | 0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes] |
rs11634955 | 0.99[ASN][1000 genomes] |
rs11638106 | 0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes] |
rs11638154 | 0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1456299 | 0.94[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes] |
rs1456300 | 0.92[ASN][1000 genomes] |
rs2054166 | 0.94[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2124592 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2168474 | 0.83[ASN][1000 genomes] |
rs2278989 | 0.83[CHB][hapmap] |
rs2278990 | 0.83[CHB][hapmap] |
rs2305716 | 0.94[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes] |
rs2607119 | 0.94[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2622775 | 0.89[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
rs28576876 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2899477 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4774597 | 0.81[AMR][1000 genomes] |
rs4775943 | 0.81[JPT][hapmap] |
rs4775968 | 0.94[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes] |
rs55982453 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60060794 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7167760 | 1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7168749 | 0.96[ASN][1000 genomes] |
rs7170980 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7171884 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7183479 | 1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs744039 | 0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes] |
rs8023455 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8030121 | 0.80[AMR][1000 genomes] |
rs8034197 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs8037167 | 0.83[CHB][hapmap] |
rs8037340 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs8042840 | 0.83[CHB][hapmap] |
rs9744054 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv471243 | chr15:51345485-52018096 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
2 | nsv904219 | chr15:51851999-51977159 | Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
3 | nsv457139 | chr15:51854718-51977159 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
4 | nsv569407 | chr15:51854718-51977159 | Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
5 | nsv1035967 | chr15:51949866-52008736 | Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |