Variant report

Variant	rs11635462
Chromosome Location	chr15:92630464-92630465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs207977	0.80[EUR][1000 genomes]
rs2892291	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290452	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178811	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871167	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:92620800-92635600	Weak transcription	Spleen	Spleen
6	chr15:92621000-92638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:92621000-92638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:92621000-92639200	Weak transcription	Lung	lung
9	chr15:92621400-92634200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:92621400-92638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:92623400-92640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:92625600-92631200	Weak transcription	Brain Substantia Nigra	brain
13	chr15:92625600-92631200	Weak transcription	Right Ventricle	heart
14	chr15:92625600-92635200	Weak transcription	Right Atrium	heart
15	chr15:92625600-92638200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:92625800-92634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:92626000-92633400	Weak transcription	Brain Angular Gyrus	brain
18	chr15:92626000-92633600	Weak transcription	Brain Anterior Caudate	brain
19	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:92626200-92633000	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:92626200-92633200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:92626200-92633600	Weak transcription	Left Ventricle	heart
23	chr15:92626800-92633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:92627400-92635400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:92628600-92634200	Weak transcription	Fetal Brain Female	brain
27	chr15:92628800-92634200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:92628800-92634200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:92629000-92634200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:92630400-92630800	Enhancers	NHEK	skin
31	chr15:92630400-92631400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:92630400-92631400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:92630400-92631600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:92630400-92632000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr15:92630400-92632000	Enhancers	HMEC	breast

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