Variant report

Variant	rs207977
Chromosome Location	chr15:92635167-92635168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92617275..92618908-chr15:92634288..92637131,2	K562	blood:
2	chr15:92634147..92635552-chr15:92926425..92927394,9	MCF-7	breast:
3	chr15:92633756..92635582-chr15:92847071..92849602,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11635462	0.80[EUR][1000 genomes]
rs1517620	0.82[EUR][1000 genomes]
rs22198	0.86[ASN][1000 genomes]
rs2892291	0.85[EUR][1000 genomes]
rs4290452	0.85[EUR][1000 genomes]
rs7178811	0.83[EUR][1000 genomes]
rs871167	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:92620800-92635600	Weak transcription	Spleen	Spleen
5	chr15:92621000-92638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:92621000-92638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:92621000-92639200	Weak transcription	Lung	lung
8	chr15:92621400-92638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:92623400-92640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:92625600-92635200	Weak transcription	Right Atrium	heart
11	chr15:92625600-92638200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:92627400-92635400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:92630800-92641800	Weak transcription	NHEK	skin
16	chr15:92631200-92638200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:92631400-92638200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:92631400-92640600	Weak transcription	Esophagus	oesophagus
19	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
21	chr15:92633000-92636600	Enhancers	Brain Hippocampus Middle	brain
22	chr15:92633200-92637000	Enhancers	Brain Substantia Nigra	brain
23	chr15:92633600-92635200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:92633600-92635400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:92633600-92635400	Enhancers	Right Ventricle	heart
26	chr15:92633600-92635600	Enhancers	Brain Anterior Caudate	brain
27	chr15:92633600-92636000	Enhancers	Left Ventricle	heart
28	chr15:92634000-92636200	Enhancers	Fetal Heart	heart
29	chr15:92634000-92638000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:92634000-92638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:92634200-92635200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr15:92634200-92636000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr15:92634400-92636200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr15:92634600-92636800	Enhancers	Brain Cingulate Gyrus	brain
35	chr15:92634600-92638600	Enhancers	Primary hematopoietic stem cells	blood
36	chr15:92634600-92638600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:92634800-92636600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:92634800-92640600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:92634800-92640600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:92634800-92640600	Weak transcription	Fetal Brain Female	brain
41	chr15:92635000-92639400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr15:92635000-92640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr15:92635000-92640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:92635000-92640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:92635000-92640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:92635000-92640600	Weak transcription	Brain Angular Gyrus	brain
47	chr15:92635000-92640600	Weak transcription	Brain Inferior Temporal Lobe	brain

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