The 2.0 version of rSNPBase

Variant report

Variant rs116358
Chromosome Location chr1:171565342-171565343
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171524400-171566400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:171529600-171566200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr1:171554400-171568400 Weak transcription Psoas Muscle Psoas
4 chr1:171556800-171567600 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:171558800-171573200 Weak transcription Small Intestine intestine
6 chr1:171561200-171569800 Weak transcription Pancreas Pancrea
7 chr1:171561600-171570000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:171561600-171572200 Weak transcription Aorta Aorta
9 chr1:171561800-171565400 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:171561800-171565400 Weak transcription Brain Angular Gyrus brain
11 chr1:171561800-171565400 Weak transcription Esophagus oesophagus
12 chr1:171561800-171565400 Weak transcription Left Ventricle heart
13 chr1:171561800-171565400 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:171561800-171565400 Weak transcription GM12878-XiMat blood
15 chr1:171561800-171566000 Weak transcription Fetal Lung lung
16 chr1:171561800-171566000 Weak transcription Gastric stomach
17 chr1:171561800-171566200 Weak transcription Stomach Smooth Muscle stomach
18 chr1:171561800-171567000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:171561800-171567600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:171561800-171568000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:171561800-171568000 Weak transcription K562 blood
22 chr1:171561800-171570200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:171561800-171570200 Weak transcription Lung lung
24 chr1:171561800-171570400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:171561800-171572200 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr1:171561800-171576600 Weak transcription Brain Substantia Nigra brain
27 chr1:171562000-171565800 Weak transcription Primary hematopoietic stem cells blood
28 chr1:171562000-171568000 Weak transcription Thymus Thymus
29 chr1:171562000-171568200 Weak transcription NHDF-Ad bronchial
30 chr1:171562000-171569000 Weak transcription H9 Cell Line embryonic stem cell
31 chr1:171562000-171572000 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr1:171562200-171565600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:171562200-171565800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:171562200-171571800 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr1:171562200-171575600 Weak transcription HepG2 liver
36 chr1:171562400-171565400 Weak transcription NHLF lung
37 chr1:171562600-171566200 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:171562800-171566000 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr1:171562800-171566000 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr1:171562800-171572000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr1:171562800-171572200 Weak transcription iPS-18 Cell Line embryonic stem cell
42 chr1:171563200-171565400 Weak transcription Placenta Amnion Placenta Amnion
43 chr1:171563200-171572000 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:171563400-171565800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:171563400-171566200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:171563600-171565400 Weak transcription Primary monocytes fromperipheralblood blood
47 chr1:171563600-171565600 Weak transcription Spleen Spleen
48 chr1:171563600-171566400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:171563600-171566600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:171563800-171565400 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015