The 2.0 version of rSNPBase

Variant report

Variant rs4916230
Chromosome Location chr1:171472390-171472391
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171456000-171481800 Weak transcription Placenta Placenta
2 chr1:171456200-171475000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:171456400-171473000 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:171456400-171481800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
5 chr1:171456400-171483600 Weak transcription Fetal Intestine Large intestine
6 chr1:171456800-171474800 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr1:171457800-171482000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:171457800-171482200 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:171459000-171482000 Weak transcription HMEC breast
10 chr1:171460800-171481400 Weak transcription HSMM muscle
11 chr1:171462600-171478000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:171462600-171482400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:171463000-171483200 Weak transcription Fetal Muscle Leg muscle
14 chr1:171464000-171475200 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:171464000-171483200 Weak transcription Esophagus oesophagus
16 chr1:171464200-171474600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:171464200-171476000 Weak transcription NHDF-Ad bronchial
18 chr1:171464200-171476800 Weak transcription Brain Angular Gyrus brain
19 chr1:171464200-171481600 Weak transcription NHEK skin
20 chr1:171464400-171475400 Weak transcription NH-A brain
21 chr1:171465000-171473400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:171465000-171475000 Weak transcription Rectal Smooth Muscle rectum
23 chr1:171465000-171476200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:171465200-171472400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:171465200-171475200 Weak transcription Osteobl bone
26 chr1:171465200-171475400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:171465200-171481800 Weak transcription HUVEC blood vessel
28 chr1:171465200-171482200 Weak transcription Fetal Lung lung
29 chr1:171465200-171483200 Weak transcription NHLF lung
30 chr1:171465200-171483600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:171466200-171475000 Weak transcription Brain Inferior Temporal Lobe brain
32 chr1:171466200-171475600 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:171466400-171475600 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr1:171466800-171476200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:171468000-171482200 Weak transcription Hela-S3 cervix
36 chr1:171468200-171475400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:171468200-171475600 Weak transcription A549 lung
38 chr1:171468400-171474200 Weak transcription Psoas Muscle Psoas
39 chr1:171468400-171483200 Weak transcription Fetal Muscle Trunk muscle
40 chr1:171468800-171483600 Weak transcription Gastric stomach
41 chr1:171469000-171483600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:171469400-171473000 Genic enhancers Primary T helper cells PMA-I stimulated --
43 chr1:171469400-171481400 Enhancers Primary T killer naive cells fromperipheralblood blood
44 chr1:171469600-171472600 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr1:171469600-171473200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr1:171469600-171482200 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr1:171469800-171472400 Strong transcription Primary B cells from cord blood blood
48 chr1:171470000-171475600 Weak transcription Monocytes-CD14+_RO01746 blood
49 chr1:171470200-171474600 Weak transcription Dnd41 blood
50 chr1:171470200-171481200 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015