Variant report

Variant	rs11636535
Chromosome Location	chr15:73681648-73681649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16957846	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495062	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495063	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495064	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7174643	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73678800-73682800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr15:73679800-73681800	Weak transcription	Right Atrium	heart
3	chr15:73679800-73683000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:73680000-73682400	Enhancers	Hela-S3	cervix
5	chr15:73680200-73682200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:73680200-73682400	Enhancers	Stomach Mucosa	stomach
7	chr15:73680200-73683400	Enhancers	Fetal Intestine Large	intestine
8	chr15:73680200-73683800	Enhancers	Fetal Intestine Small	intestine
9	chr15:73680200-73684200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:73680600-73681800	Weak transcription	Gastric	stomach
11	chr15:73680600-73682200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:73680600-73682400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr15:73680800-73681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:73680800-73681800	Weak transcription	Placenta	Placenta
15	chr15:73680800-73681800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:73680800-73682000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:73680800-73682000	Enhancers	A549	lung
18	chr15:73681000-73682000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:73681000-73682000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:73681000-73682000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:73681000-73682200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:73681000-73684800	Enhancers	Fetal Heart	heart
23	chr15:73681400-73681800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:73681400-73682400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:73681400-73682800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr15:73681400-73682800	Enhancers	Left Ventricle	heart
27	chr15:73681400-73683000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:73681600-73681800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:73681600-73682600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr15:73681600-73682800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr15:73681600-73683000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:73681600-73683400	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links