Variant report

Variant	rs6495064
Chromosome Location	chr15:73682867-73682868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73678566..73680640-chr15:73681994..73683835,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11636535	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957846	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495062	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495063	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174643	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175207	0.81[ASN][1000 genomes]
rs8038766	0.81[TSI][hapmap]
rs8040533	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6495064	THAP10	cis	cerebellum	SCAN
rs6495064	NA	cis	multi-tissue	Pritchard

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73679800-73683000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:73680200-73683400	Enhancers	Fetal Intestine Large	intestine
3	chr15:73680200-73683800	Enhancers	Fetal Intestine Small	intestine
4	chr15:73680200-73684200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:73681000-73684800	Enhancers	Fetal Heart	heart
6	chr15:73681400-73683000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:73681600-73683000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:73681600-73683400	Enhancers	Right Ventricle	heart
9	chr15:73681800-73683400	Enhancers	HepG2	liver
10	chr15:73681800-73684000	Enhancers	Right Atrium	heart
11	chr15:73682200-73683000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:73682200-73683000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:73682200-73685400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:73682200-73689600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:73682400-73685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:73682400-73685600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:73682400-73689200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:73682400-73689600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:73682400-73689600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:73682800-73683000	Flanking Active TSS	A549	lung
21	chr15:73682800-73683800	Weak transcription	Left Ventricle	heart
22	chr15:73682800-73689400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:73682800-73689600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:73682800-73689600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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