Variant report

Variant	rs7174643
Chromosome Location	chr15:73680301-73680302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73675231..73677714-chr15:73678506..73680844,2	K562	blood:
2	chr15:73674858..73677600-chr15:73680013..73681646,2	MCF-7	breast:
3	chr15:73667033..73669019-chr15:73678260..73680889,2	MCF-7	breast:
4	chr15:73672396..73674287-chr15:73677833..73681089,3	MCF-7	breast:
5	chr15:73678566..73680640-chr15:73681994..73683835,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11636535	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957846	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495062	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495063	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495064	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175207	0.81[ASN][1000 genomes]
rs8038766	0.81[TSI][hapmap]
rs8040533	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1823194	chr15:73660092-73680301	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7174643	THAP10	cis	cerebellum	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73676200-73681600	Weak transcription	Right Ventricle	heart
2	chr15:73678600-73681000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:73678600-73681000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73678800-73682800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:73679000-73681200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:73679200-73680800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:73679400-73680400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr15:73679400-73680400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
9	chr15:73679400-73680800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:73679400-73680800	Enhancers	Pancreas	Pancrea
11	chr15:73679600-73680400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr15:73679600-73680400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr15:73679600-73680600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
14	chr15:73679600-73681000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:73679800-73681400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:73679800-73681800	Weak transcription	Right Atrium	heart
17	chr15:73679800-73683000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:73680000-73680400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:73680000-73680400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:73680000-73680400	Enhancers	A549	lung
21	chr15:73680000-73680600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:73680000-73680600	Enhancers	Gastric	stomach
23	chr15:73680000-73680800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:73680000-73680800	Enhancers	Placenta	Placenta
25	chr15:73680000-73681000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr15:73680000-73681000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr15:73680000-73681000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:73680000-73681200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr15:73680000-73682400	Enhancers	Hela-S3	cervix
30	chr15:73680200-73680400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:73680200-73680400	Bivalent Enhancer	NHDF-Ad	bronchial
32	chr15:73680200-73680600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr15:73680200-73680600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr15:73680200-73680600	Enhancers	Ovary	ovary
35	chr15:73680200-73680600	Enhancers	Osteobl	bone
36	chr15:73680200-73680800	Enhancers	NH-A	brain
37	chr15:73680200-73681000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:73680200-73681000	Flanking Active TSS	Fetal Heart	heart
39	chr15:73680200-73681000	Enhancers	Left Ventricle	heart
40	chr15:73680200-73681000	Enhancers	HUVEC	blood vessel
41	chr15:73680200-73682200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:73680200-73682400	Enhancers	Stomach Mucosa	stomach
43	chr15:73680200-73683400	Enhancers	Fetal Intestine Large	intestine
44	chr15:73680200-73683800	Enhancers	Fetal Intestine Small	intestine
45	chr15:73680200-73684200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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