Variant report

Variant	rs11636993
Chromosome Location	chr15:99982197-99982198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99974033..99977897-chr15:99978912..99982934,5	K562	blood:
2	chr15:99981781..99983657-chr15:100018041..100019744,2	MCF-7	breast:
3	chr15:99977572..99979807-chr15:99980072..99982815,2	K562	blood:
4	chr15:99975316..99977266-chr15:99981293..99982934,2	K562	blood:
5	chr15:99981264..99984715-chr15:99985641..99987973,4	MCF-7	breast:
6	chr15:99981180..99982961-chr15:99993073..99995315,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7179740	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8042934	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv519800	chr15:99950772-99987109	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv904552	chr15:99954278-99982447	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv904553	chr15:99954278-99983175	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv904556	chr15:99956954-99987109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv904557	chr15:99956954-99991506	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv519319	chr15:99972661-99991506	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv570728	chr15:99973369-99986764	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99974200-99984000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:99975000-99982200	Enhancers	Fetal Heart	heart
3	chr15:99976000-99982200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:99976000-99982200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:99976600-99984800	Enhancers	Fetal Muscle Leg	muscle
6	chr15:99976800-99982400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:99978400-99982200	Weak transcription	Primary B cells from cord blood	blood
8	chr15:99978800-99982200	Weak transcription	Psoas Muscle	Psoas
9	chr15:99978800-99983000	Weak transcription	Aorta	Aorta
10	chr15:99979000-99982200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:99979000-99982200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:99979200-99982200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:99979200-99982200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:99979200-99995800	Enhancers	Fetal Thymus	thymus
15	chr15:99979400-99982200	Weak transcription	Dnd41	blood
16	chr15:99979400-99984000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:99979400-99987000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:99979400-99987400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:99979600-99983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:99980400-99982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:99980400-99984800	Enhancers	Left Ventricle	heart
22	chr15:99980800-99982200	Enhancers	Stomach Smooth Muscle	stomach
23	chr15:99980800-99984200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:99980800-99984200	Enhancers	Right Ventricle	heart
25	chr15:99980800-99984400	Enhancers	Fetal Muscle Trunk	muscle
26	chr15:99980800-99987600	Enhancers	Thymus	Thymus
27	chr15:99981000-99983200	Enhancers	Brain Germinal Matrix	brain
28	chr15:99981000-99984600	Enhancers	Right Atrium	heart
29	chr15:99981200-99982200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr15:99981200-99982800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:99981200-99983200	Enhancers	Placenta	Placenta
32	chr15:99981200-99983600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:99981200-99984200	Enhancers	Lung	lung
34	chr15:99981200-99984400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:99981200-99984400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:99981200-99989000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr15:99981200-99990800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr15:99981200-99991000	Enhancers	Primary T cells from cord blood	blood
39	chr15:99981400-99982200	Enhancers	Rectal Smooth Muscle	rectum
40	chr15:99981400-99982200	Enhancers	Spleen	Spleen
41	chr15:99981400-99982200	Enhancers	Hela-S3	cervix
42	chr15:99981400-99982200	Enhancers	HSMMtube	muscle
43	chr15:99981400-99983400	Enhancers	Colonic Mucosa	Colon
44	chr15:99981400-99983400	Enhancers	Fetal Kidney	kidney
45	chr15:99981400-99983400	Enhancers	Fetal Lung	lung
46	chr15:99981400-99983400	Enhancers	Fetal Stomach	stomach
47	chr15:99981400-99983400	Enhancers	A549	lung
48	chr15:99981400-99983600	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr15:99981400-99984400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:99981600-99982200	Enhancers	Osteobl	bone

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