Variant report

Variant	rs7179740
Chromosome Location	chr15:99980473-99980474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99979583..99981872-chr15:99983556..99985309,2	MCF-7	breast:
2	chr15:99974033..99977897-chr15:99978912..99982934,5	K562	blood:
3	chr15:99979674..99981771-chr15:99994725..99997256,2	K562	blood:
4	chr15:99977572..99979807-chr15:99980072..99982815,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11636993	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8042934	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv519800	chr15:99950772-99987109	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv904552	chr15:99954278-99982447	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv904553	chr15:99954278-99983175	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv904555	chr15:99956954-99981269	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv904556	chr15:99956954-99987109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv904557	chr15:99956954-99991506	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv519319	chr15:99972661-99991506	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv570728	chr15:99973369-99986764	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99974200-99982000	Weak transcription	Gastric	stomach
2	chr15:99974200-99984000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:99974400-99982000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:99975000-99982200	Enhancers	Fetal Heart	heart
5	chr15:99976000-99981200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:99976000-99982000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr15:99976000-99982000	Weak transcription	Pancreas	Pancrea
8	chr15:99976000-99982200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:99976000-99982200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:99976200-99981400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:99976400-99981600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:99976400-99981600	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:99976400-99981600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:99976400-99982000	Weak transcription	HSMM	muscle
15	chr15:99976600-99981000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:99976600-99981400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:99976600-99982000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:99976600-99984800	Enhancers	Fetal Muscle Leg	muscle
19	chr15:99976800-99981400	Weak transcription	Hela-S3	cervix
20	chr15:99976800-99982400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:99977600-99981200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:99978000-99981400	Weak transcription	Colonic Mucosa	Colon
23	chr15:99978000-99981400	Weak transcription	Spleen	Spleen
24	chr15:99978200-99981600	Weak transcription	Stomach Mucosa	stomach
25	chr15:99978400-99981200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:99978400-99981200	Weak transcription	Esophagus	oesophagus
27	chr15:99978400-99982000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:99978400-99982000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:99978400-99982200	Weak transcription	Primary B cells from cord blood	blood
30	chr15:99978600-99981400	Weak transcription	NHLF	lung
31	chr15:99978800-99981000	Weak transcription	Right Atrium	heart
32	chr15:99978800-99981200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:99978800-99981200	Weak transcription	Lung	lung
34	chr15:99978800-99981400	Weak transcription	HSMMtube	muscle
35	chr15:99978800-99982000	Weak transcription	Fetal Intestine Small	intestine
36	chr15:99978800-99982200	Weak transcription	Psoas Muscle	Psoas
37	chr15:99978800-99983000	Weak transcription	Aorta	Aorta
38	chr15:99979000-99981200	Weak transcription	Adipose Nuclei	Adipose
39	chr15:99979000-99982200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr15:99979000-99982200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:99979200-99980800	Weak transcription	Thymus	Thymus
42	chr15:99979200-99981200	Weak transcription	Primary T cells from cord blood	blood
43	chr15:99979200-99981400	Weak transcription	Fetal Lung	lung
44	chr15:99979200-99982000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:99979200-99982000	Weak transcription	Ovary	ovary
46	chr15:99979200-99982200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:99979200-99982200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:99979200-99995800	Enhancers	Fetal Thymus	thymus
49	chr15:99979400-99980800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:99979400-99981200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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