Variant report

Variant	rs11637534
Chromosome Location	chr15:41208139-41208140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41206994..41209856-chr15:41231483..41234125,2	MCF-7	breast:
2	chr15:41195189..41208751-chr15:41218816..41225232,20	MCF-7	breast:
3	chr15:41197444..41200500-chr15:41205314..41208941,3	MCF-7	breast:
4	chr15:41204562..41209137-chr15:41220021..41226170,6	K562	blood:
5	chr15:41206507..41209083-chr15:41209333..41212226,2	K562	blood:
6	chr15:41207320..41209153-chr15:41215537..41217549,2	K562	blood:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000251161	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16971177	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16971186	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16971188	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1814568	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3743036	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs595559	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs675262	0.81[JPT][hapmap]
rs677273	1.00[JPT][hapmap]
rs690365	0.81[JPT][hapmap]
rs694213	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs8024961	0.81[JPT][hapmap]
rs8025867	1.00[JPT][hapmap]
rs880428	0.81[JPT][hapmap]
rs936221	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv3373227	chr15:41204260-41208558	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41199800-41210000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:41200000-41209400	Weak transcription	Fetal Brain Female	brain
3	chr15:41200200-41209800	Weak transcription	Right Ventricle	heart
4	chr15:41202400-41210000	Weak transcription	Left Ventricle	heart
5	chr15:41203600-41214400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:41203800-41209800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:41204600-41210400	Weak transcription	Gastric	stomach
8	chr15:41205800-41209000	Enhancers	Fetal Muscle Leg	muscle
9	chr15:41206200-41208200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:41206200-41208400	Enhancers	Adipose Nuclei	Adipose
11	chr15:41206200-41208400	Enhancers	HUVEC	blood vessel
12	chr15:41206200-41212200	Enhancers	Spleen	Spleen
13	chr15:41206400-41209800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:41206600-41208800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:41206600-41210400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:41206600-41214400	Weak transcription	Fetal Kidney	kidney
17	chr15:41206800-41211800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr15:41207000-41208400	Weak transcription	Lung	lung
19	chr15:41207000-41208600	Enhancers	Fetal Stomach	stomach
20	chr15:41207200-41208200	Enhancers	Fetal Lung	lung
21	chr15:41207200-41208200	Enhancers	HepG2	liver
22	chr15:41207200-41208400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:41207200-41211000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:41207200-41211000	Weak transcription	Right Atrium	heart
25	chr15:41207200-41211800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:41207400-41209000	Enhancers	Placenta	Placenta
27	chr15:41207600-41208800	Enhancers	Fetal Intestine Small	intestine
28	chr15:41207800-41208200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:41207800-41208400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:41207800-41208600	Enhancers	Fetal Intestine Large	intestine
31	chr15:41208000-41209800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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