Variant report

Variant	rs8025867
Chromosome Location	chr15:41160580-41160581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41134365..41142873-chr15:41160505..41167459,15	MCF-7	breast:
2	chr15:41154663..41156946-chr15:41157971..41160797,2	K562	blood:
3	chr15:41159031..41160594-chr15:41163162..41167486,4	MCF-7	breast:
4	chr15:41158277..41161838-chr15:41183042..41188176,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261183	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000104140	Chromatin interaction
ENSG00000104142	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11635602	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11637534	1.00[JPT][hapmap]
rs16971177	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16971186	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16971188	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1814568	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1814692	0.86[ASN][1000 genomes]
rs2934172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3100810	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3743036	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4552004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923887	0.87[ASN][1000 genomes]
rs595559	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs601436	0.85[CHB][hapmap]
rs601696	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs615987	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs618892	0.82[CHB][hapmap]
rs675262	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs677273	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs687949	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs690365	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs694213	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7172280	0.88[CHB][hapmap]
rs8024861	0.88[CHB][hapmap]
rs8024961	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs880428	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41137400-41165800	Weak transcription	Right Atrium	heart
2	chr15:41150000-41165600	Weak transcription	Spleen	Spleen
3	chr15:41151600-41165400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:41152000-41163800	Weak transcription	Gastric	stomach
5	chr15:41154000-41162400	Weak transcription	GM12878-XiMat	blood
6	chr15:41156200-41164000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:41156600-41163600	Weak transcription	Fetal Intestine Small	intestine
8	chr15:41157600-41161800	Weak transcription	Esophagus	oesophagus
9	chr15:41158600-41161000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:41158600-41162200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:41158600-41163000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:41158600-41163600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:41158600-41163800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:41158600-41163800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:41158600-41163800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:41158600-41163800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:41158800-41163800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:41158800-41164000	Weak transcription	A549	lung
19	chr15:41159000-41161800	Weak transcription	Pancreas	Pancrea
20	chr15:41159000-41163400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:41159000-41163800	Weak transcription	HMEC	breast
22	chr15:41159200-41162600	Weak transcription	Stomach Mucosa	stomach
23	chr15:41159600-41161600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links