Variant report

Variant	rs3743036
Chromosome Location	chr15:41188024-41188025
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41186236..41188043-chr15:41197568..41199237,2	MCF-7	breast:
2	chr15:41186714..41189408-chr15:41192146..41195371,4	MCF-7	breast:
3	chr15:41045121..41047501-chr15:41186359..41188842,2	K562	blood:
4	chr15:41044630..41047663-chr15:41185217..41189065,4	K562	blood:
5	chr15:41098099..41100613-chr15:41185742..41188181,3	K562	blood:
6	chr15:41147027..41152625-chr15:41184304..41188925,8	K562	blood:
7	chr15:41187545..41189858-chr15:41220285..41222026,2	K562	blood:
8	chr15:41135697..41137573-chr15:41186789..41189457,2	MCF-7	breast:
9	chr15:41135103..41140677-chr15:41182913..41189081,12	MCF-7	breast:
10	chr15:41185065..41188307-chr15:41217955..41221717,3	MCF-7	breast:
11	chr15:40990437..40992433-chr15:41186523..41189273,2	K562	blood:
12	chr15:40985078..40988247-chr15:41185737..41188201,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104129	Chromatin interaction
ENSG00000251161	Chromatin interaction
ENSG00000245849	Chromatin interaction
ENSG00000128917	Chromatin interaction
ENSG00000137824	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000166140	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000261183	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11635602	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11637534	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16971177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16971186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971188	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2934172	0.92[EUR][1000 genomes]
rs3100810	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4552004	1.00[EUR][1000 genomes]
rs595559	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601436	0.86[CHB][hapmap]
rs601696	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs615987	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs618892	0.85[CHB][hapmap]
rs675262	0.81[JPT][hapmap];0.82[YRI][hapmap]
rs677273	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs687949	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs690365	0.81[JPT][hapmap]
rs694213	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172280	0.89[CHB][hapmap]
rs8024861	0.89[CHB][hapmap]
rs8024961	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8025867	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs880428	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs936221	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
9	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41186200-41188200	Active TSS	HSMMtube	muscle
2	chr15:41186800-41188200	Flanking Active TSS	Colonic Mucosa	Colon
3	chr15:41187000-41188200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr15:41187000-41188400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr15:41187200-41188200	Flanking Active TSS	Brain Substantia Nigra	brain
6	chr15:41187400-41188200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:41187400-41188200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:41187400-41188200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr15:41187400-41188200	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr15:41187400-41188200	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr15:41187400-41188200	Flanking Active TSS	Fetal Lung	lung
12	chr15:41187400-41188200	Flanking Active TSS	HMEC	breast
13	chr15:41187400-41188200	Flanking Active TSS	HUVEC	blood vessel
14	chr15:41187400-41188200	Flanking Active TSS	NH-A	brain
15	chr15:41187600-41188200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr15:41187600-41188200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:41187600-41188200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:41187600-41188200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr15:41187600-41188200	Flanking Active TSS	Fetal Brain Male	brain
20	chr15:41187600-41188200	Flanking Active TSS	Fetal Intestine Large	intestine
21	chr15:41187600-41188200	Flanking Active TSS	Lung	lung
22	chr15:41187600-41188200	Enhancers	Small Intestine	intestine
23	chr15:41187600-41188200	Enhancers	Stomach Mucosa	stomach
24	chr15:41187600-41188200	Flanking Active TSS	HepG2	liver
25	chr15:41187600-41188200	Flanking Active TSS	Osteobl	bone
26	chr15:41187600-41188600	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr15:41187600-41191200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:41187600-41191200	Weak transcription	Aorta	Aorta
29	chr15:41187600-41194400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr15:41187800-41188200	Genic enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:41187800-41188200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:41187800-41188200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:41187800-41188200	Enhancers	Esophagus	oesophagus
34	chr15:41187800-41188200	Genic enhancers	Fetal Muscle Leg	muscle
35	chr15:41187800-41188200	Genic enhancers	Placenta	Placenta
36	chr15:41187800-41188200	Genic enhancers	Fetal Thymus	thymus
37	chr15:41187800-41188200	Enhancers	Gastric	stomach
38	chr15:41187800-41188200	Enhancers	Left Ventricle	heart
39	chr15:41187800-41188200	Genic enhancers	Spleen	Spleen
40	chr15:41187800-41188200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
41	chr15:41187800-41188200	Flanking Active TSS	NHDF-Ad	bronchial
42	chr15:41187800-41188200	Transcr. at gene 5' and 3'	NHEK	skin
43	chr15:41187800-41188400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:41187800-41188400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:41187800-41188400	Genic enhancers	Primary T cells from cord blood	blood
46	chr15:41187800-41188400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:41187800-41188400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr15:41187800-41188400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr15:41187800-41188400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:41187800-41188400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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