Variant report

Variant	rs11637563
Chromosome Location	chr15:83461040-83461041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83456831..83459102-chr15:83459317..83461844,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1105287	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11631033	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11631209	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11631378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633676	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11635290	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11635357	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11637448	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11857233	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12907810	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12914752	0.84[EUR][1000 genomes]
rs12917248	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1553886	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17158255	0.83[ASN][1000 genomes]
rs2137052	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34337936	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35590674	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35852340	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35989107	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35989256	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3814281	0.83[ASN][1000 genomes]
rs3814282	0.83[ASN][1000 genomes]
rs4132210	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4779061	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57252413	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60414706	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72753973	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054171	chr15:83237514-83468077	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1036950	chr15:83245326-83461261	Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1036462	chr15:83245326-83472507	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83434800-83462200	Weak transcription	Ovary	ovary
2	chr15:83436400-83467800	Weak transcription	Psoas Muscle	Psoas
3	chr15:83440800-83468000	Weak transcription	Right Ventricle	heart
4	chr15:83450400-83477600	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:83455600-83467400	Weak transcription	Fetal Heart	heart
6	chr15:83456000-83468200	Weak transcription	Left Ventricle	heart
7	chr15:83456200-83464200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:83456200-83467800	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:83460200-83461600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:83460200-83461600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:83460400-83461600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:83460400-83461800	Enhancers	HMEC	breast
13	chr15:83460400-83462200	Enhancers	NHEK	skin
14	chr15:83461000-83464200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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