Variant report

Variant	rs34337936
Chromosome Location	chr15:83481259-83481260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83480184..83483063-chr15:83673551..83675141,2	K562	blood:
2	chr15:83346623..83348757-chr15:83479507..83481301,2	K562	blood:
3	chr15:83477828..83481866-chr15:83483118..83489176,7	K562	blood:
4	chr15:83476157..83479071-chr15:83480775..83482878,2	K562	blood:
5	chr15:83313427..83317808-chr15:83477553..83483000,6	K562	blood:
6	chr15:83479049..83481749-chr15:83503841..83505564,2	K562	blood:

Variant related genes	Relation type
ENSG00000156232	Chromatin interaction
ENSG00000214575	Chromatin interaction
ENSG00000259462	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1105287	0.88[EUR][1000 genomes]
rs11631033	0.86[EUR][1000 genomes]
rs11631209	0.86[EUR][1000 genomes]
rs11631378	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11633676	0.88[EUR][1000 genomes]
rs11635290	0.86[EUR][1000 genomes]
rs11635357	0.86[EUR][1000 genomes]
rs11637448	0.80[EUR][1000 genomes]
rs11637563	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857233	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12907810	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12914752	0.80[EUR][1000 genomes]
rs12917248	0.87[EUR][1000 genomes]
rs1553886	0.88[EUR][1000 genomes]
rs17158255	0.86[ASN][1000 genomes]
rs2137052	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35590674	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35852340	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35989107	0.88[EUR][1000 genomes]
rs35989256	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3814281	0.86[ASN][1000 genomes]
rs3814282	0.86[ASN][1000 genomes]
rs4132210	0.88[EUR][1000 genomes]
rs4779061	0.87[EUR][1000 genomes]
rs57252413	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60414706	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72753973	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv977747	chr15:83479370-83496161	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	nsv9288	chr15:83479484-83496828	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83478000-83481400	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr15:83478200-83481800	Active TSS	GM12878-XiMat	blood
3	chr15:83479400-83481800	Weak transcription	Spleen	Spleen
4	chr15:83479400-83482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:83479600-83485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:83479600-83504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:83479800-83483200	Weak transcription	Gastric	stomach
8	chr15:83479800-83504000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:83480000-83482000	Weak transcription	Lung	lung
10	chr15:83480000-83482800	Weak transcription	Fetal Brain Female	brain
11	chr15:83480000-83485600	Weak transcription	Esophagus	oesophagus
12	chr15:83480000-83497000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:83480000-83501600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:83480200-83481400	Enhancers	Adipose Nuclei	Adipose
15	chr15:83480200-83481400	Enhancers	Brain Cingulate Gyrus	brain
16	chr15:83480200-83481400	Weak transcription	Placenta	Placenta
17	chr15:83480200-83481600	Enhancers	Colon Smooth Muscle	Colon
18	chr15:83480200-83481600	Enhancers	Fetal Muscle Leg	muscle
19	chr15:83480200-83481800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:83480200-83484000	Weak transcription	Fetal Brain Male	brain
21	chr15:83480200-83485400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:83480200-83487400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:83480200-83489000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:83480400-83481400	Enhancers	Brain Hippocampus Middle	brain
25	chr15:83480400-83481600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr15:83480400-83481600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr15:83480400-83481600	Enhancers	Fetal Kidney	kidney
28	chr15:83480400-83481800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:83480400-83481800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:83480400-83481800	Weak transcription	HSMMtube	muscle
31	chr15:83480400-83482000	Weak transcription	Fetal Intestine Small	intestine
32	chr15:83480400-83482200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr15:83480400-83482400	Weak transcription	Fetal Stomach	stomach
34	chr15:83480400-83482400	Weak transcription	HSMM	muscle
35	chr15:83480400-83482600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:83480400-83482800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:83480400-83484000	Weak transcription	Colonic Mucosa	Colon
38	chr15:83480400-83484200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:83480400-83484600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:83480400-83485400	Weak transcription	Thymus	Thymus
41	chr15:83480400-83485800	Weak transcription	Aorta	Aorta
42	chr15:83480400-83487400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:83480400-83488400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:83480400-83493600	Weak transcription	Brain Germinal Matrix	brain
45	chr15:83480400-83500600	Weak transcription	Stomach Mucosa	stomach
46	chr15:83480400-83507000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr15:83480600-83481400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr15:83480600-83481400	Enhancers	Ovary	ovary
49	chr15:83480600-83481400	Enhancers	Psoas Muscle	Psoas
50	chr15:83480600-83481400	Enhancers	HepG2	liver

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