Variant report

Variant	rs35590674
Chromosome Location	chr15:83480154-83480155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83478686..83480372-chr15:83679248..83681221,2	MCF-7	breast:
2	chr15:83346623..83348757-chr15:83479507..83481301,2	K562	blood:
3	chr15:83475882..83480852-chr15:83678880..83683242,6	MCF-7	breast:
4	chr15:83376836..83378789-chr15:83478421..83480593,2	MCF-7	breast:
5	chr15:83477828..83481866-chr15:83483118..83489176,7	K562	blood:
6	chr15:83347885..83349520-chr15:83478710..83480628,2	MCF-7	breast:
7	chr15:83313427..83317808-chr15:83477553..83483000,6	K562	blood:
8	chr15:83478211..83480402-chr15:83735487..83737469,2	MCF-7	breast:
9	chr15:83417500..83421911-chr15:83474614..83480217,8	MCF-7	breast:
10	chr15:83478559..83480416-chr15:83489248..83490840,2	MCF-7	breast:
11	chr15:83417832..83422548-chr15:83476028..83480956,9	K562	blood:
12	chr15:83479049..83481749-chr15:83503841..83505564,2	K562	blood:
13	chr15:83333197..83334998-chr15:83479229..83480988,2	MCF-7	breast:
14	chr15:83476923..83480237-chr15:83875108..83878990,4	MCF-7	breast:
15	chr15:83477632..83480172-chr15:83484528..83487051,2	MCF-7	breast:
16	chr15:83417361..83424147-chr15:83476165..83481050,26	MCF-7	breast:
17	chr15:83348193..83350766-chr15:83477443..83480779,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259462	Chromatin interaction
ENSG00000252690	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000103723	Chromatin interaction
ENSG00000156232	Chromatin interaction
ENSG00000250988	Chromatin interaction
ENSG00000214575	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1105287	0.90[EUR][1000 genomes]
rs11631033	0.87[EUR][1000 genomes]
rs11631209	0.87[EUR][1000 genomes]
rs11631378	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11633676	0.90[EUR][1000 genomes]
rs11635290	0.88[EUR][1000 genomes]
rs11635357	0.87[EUR][1000 genomes]
rs11637448	0.82[EUR][1000 genomes]
rs11637563	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11857233	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12907810	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12914752	0.82[EUR][1000 genomes]
rs12917248	0.88[EUR][1000 genomes]
rs1553886	0.90[EUR][1000 genomes]
rs17158255	0.83[ASN][1000 genomes]
rs2137052	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34337936	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35852340	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35989107	0.90[EUR][1000 genomes]
rs35989256	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3814281	0.83[ASN][1000 genomes]
rs3814282	0.83[ASN][1000 genomes]
rs4132210	0.90[EUR][1000 genomes]
rs4779061	0.89[EUR][1000 genomes]
rs57252413	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60414706	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72753973	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	esv3371602	chr15:83476798-83481096	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
5	nsv977747	chr15:83479370-83496161	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv9288	chr15:83479484-83496828	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83477400-83480400	Active TSS	Colonic Mucosa	Colon
2	chr15:83477400-83480400	Active TSS	Stomach Mucosa	stomach
3	chr15:83477400-83481000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:83477600-83480200	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr15:83477600-83480400	Active TSS	Psoas Muscle	Psoas
6	chr15:83477600-83480800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:83477800-83480200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:83477800-83480400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr15:83477800-83480400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:83477800-83481000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:83478000-83480200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:83478000-83480200	Active TSS	Fetal Muscle Trunk	muscle
13	chr15:83478000-83480200	Active TSS	Placenta	Placenta
14	chr15:83478000-83480400	Active TSS	Aorta	Aorta
15	chr15:83478000-83480400	Active TSS	Fetal Intestine Small	intestine
16	chr15:83478000-83480400	Active TSS	Fetal Kidney	kidney
17	chr15:83478000-83480400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr15:83478000-83480400	Active TSS	Ovary	ovary
19	chr15:83478000-83480400	Active TSS	Right Ventricle	heart
20	chr15:83478000-83480400	Active TSS	Stomach Smooth Muscle	stomach
21	chr15:83478000-83480600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:83478000-83480800	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr15:83478000-83480800	Active TSS	NH-A	brain
24	chr15:83478000-83481000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:83478000-83481400	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr15:83478200-83480200	Active TSS	Primary B cells from peripheral blood	blood
27	chr15:83478200-83480200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr15:83478200-83480200	Active TSS	NHDF-Ad	bronchial
29	chr15:83478200-83480400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:83478200-83480400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:83478200-83480400	Active TSS	Primary T cells from cord blood	blood
32	chr15:83478200-83480400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:83478200-83480400	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr15:83478200-83480400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr15:83478200-83480400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:83478200-83480400	Active TSS	Duodenum Mucosa	Duodenum
37	chr15:83478200-83480400	Active TSS	Fetal Stomach	stomach
38	chr15:83478200-83480400	Active TSS	Fetal Thymus	thymus
39	chr15:83478200-83480400	Active TSS	Thymus	Thymus
40	chr15:83478200-83480400	Active TSS	A549	lung
41	chr15:83478200-83480400	Active TSS	HSMM	muscle
42	chr15:83478200-83480400	Active TSS	HSMMtube	muscle
43	chr15:83478200-83480400	Active TSS	Osteobl	bone
44	chr15:83478200-83480600	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr15:83478200-83480600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:83478200-83480600	Active TSS	Muscle Satellite Cultured Cells	--
47	chr15:83478200-83480600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:83478200-83480600	Active TSS	Fetal Intestine Large	intestine
49	chr15:83478200-83480800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:83478200-83480800	Active TSS	Primary T cells fromperipheralblood	blood

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