Variant report

Variant	rs11638568
Chromosome Location	chr15:45998459-45998460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45927063..45929876-chr15:45998234..45999862,2	MCF-7	breast:
2	chr15:45997957..45998586-chr15:46082546..46083244,2	MCF-7	breast:
3	chr15:45997964..45998598-chr15:46082040..46082768,2	K562	blood:
4	chr15:45997687..45998467-chr15:46006520..46007480,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28460535	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726373	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45997000-46002800	Weak transcription	Spleen	Spleen
2	chr15:45997200-45998600	Active TSS	Stomach Smooth Muscle	stomach
3	chr15:45997600-46002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:45998000-45999600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:45998000-46000000	Weak transcription	Esophagus	oesophagus
6	chr15:45998000-46002200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:45998000-46003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:45998000-46005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:45998000-46007000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:45998200-45998600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr15:45998200-45998600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr15:45998200-45998600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:45998200-45998600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:45998200-45998600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:45998200-45998600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr15:45998200-45998600	Enhancers	Hela-S3	cervix
17	chr15:45998200-45998600	Enhancers	NHDF-Ad	bronchial
18	chr15:45998200-45998600	Enhancers	NHLF	lung
19	chr15:45998200-45998800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:45998200-46007000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:45998400-45998600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:45998400-45998600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr15:45998400-45998600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr15:45998400-45998600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr15:45998400-45998600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:45998400-45998600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:45998400-45998600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:45998400-45998600	Enhancers	Brain Substantia Nigra	brain
29	chr15:45998400-45998800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr15:45998400-46002600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:45998400-46002800	Weak transcription	Colon Smooth Muscle	Colon

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