Variant report

Variant	rs28460535
Chromosome Location	chr15:45995595-45995596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45926246..45929089-chr15:45993030..45995776,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137767	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11638568	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726373	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45983200-45996000	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:45983400-45996800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:45983600-45996400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:45983800-45996200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:45984200-45996200	Weak transcription	Fetal Stomach	stomach
6	chr15:45984200-45996200	Weak transcription	NHDF-Ad	bronchial
7	chr15:45984400-45996400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:45985200-45996200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:45985400-45996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:45985400-45996800	Weak transcription	HMEC	breast
11	chr15:45985800-45995800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:45985800-45995800	Weak transcription	GM12878-XiMat	blood
13	chr15:45985800-45996200	Weak transcription	Gastric	stomach
14	chr15:45985800-45996400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:45985800-45996400	Weak transcription	Adipose Nuclei	Adipose
16	chr15:45985800-45996400	Weak transcription	Right Ventricle	heart
17	chr15:45986000-45996200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:45986000-45996400	Weak transcription	Aorta	Aorta
19	chr15:45986000-45996400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:45986000-45996400	Weak transcription	Spleen	Spleen
21	chr15:45986000-45996600	Weak transcription	Colonic Mucosa	Colon
22	chr15:45986200-45996400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:45986200-45996400	Weak transcription	Lung	lung
24	chr15:45986200-45996400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:45986400-45996200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:45986800-45996000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:45987000-45996400	Weak transcription	Liver	Liver
28	chr15:45987000-45996400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:45987800-45996200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:45988200-45996200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:45988200-45996400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:45988200-45996400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:45988200-45996600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:45992600-45996000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:45994600-45996400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:45994800-45996200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:45994800-45996200	Weak transcription	Esophagus	oesophagus
38	chr15:45994800-45996400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:45994800-45996400	Weak transcription	Pancreas	Pancrea
40	chr15:45994800-45996600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:45995000-45996000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:45995000-45996600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:45995000-45996600	Weak transcription	NHEK	skin

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