Variant report

Variant	rs11638981
Chromosome Location	chr15:49321529-49321530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49316228..49318590-chr15:49318966..49321819,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11634901	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17393193	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17394420	1.00[ASW][hapmap]
rs2413932	0.84[EUR][1000 genomes]
rs34895054	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs11638981	SECISBP2L	cis	cerebellar cortex	BrainEAC
rs11638981	SECISBP2L	cis	parietal	SCAN
rs11638981	SECISBP2L	cis	inferior olivary nucleus	BrainEAC
rs11638981	C15orf33	cis	cerebellum	SCAN
rs11638981	SECISBP2L	cis	substantia nigra	BrainEAC
rs11638981	SECISBP2L	cis	brain	BrainEAC
rs11638981	SECISBP2L	cis	intralobular white matter	BrainEAC
rs11638981	CASC4	cis	cerebellum	SCAN
rs11638981	SECISBP2L	cis	putamen	BrainEAC
rs11638981	SECISBP2L	cis	occipital cortex	BrainEAC
rs11638981	SECISBP2L	cis	hippocampus	BrainEAC
rs11638981	SECISBP2L	cis	cerebellum	SCAN
rs11638981	SECISBP2L	cis	thalamus	BrainEAC
rs11638981	SECISBP2L	cis	temporal cortex	BrainEAC
rs11638981	SECISBP2L	cis	frontal cortex	BrainEAC

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:49301400-49329000	Weak transcription	K562	blood
13	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
14	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:49308400-49327600	Weak transcription	Dnd41	blood
16	chr15:49308600-49323000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
18	chr15:49308600-49327000	Weak transcription	Gastric	stomach
19	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
20	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
21	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
23	chr15:49309200-49327600	Weak transcription	NHEK	skin
24	chr15:49309600-49321600	Weak transcription	HMEC	breast
25	chr15:49310000-49328400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:49310600-49323600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:49310600-49324400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:49311200-49324600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:49312000-49323200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
31	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:49314000-49322000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr15:49314200-49329000	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:49314400-49322600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:49315200-49330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr15:49315800-49328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:49316000-49327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:49316600-49328200	Strong transcription	HSMM	muscle
39	chr15:49317000-49322000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr15:49317000-49325400	Strong transcription	Liver	Liver
41	chr15:49317200-49321800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:49317200-49322000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:49317200-49322400	Strong transcription	Brain Anterior Caudate	brain
44	chr15:49317200-49329600	Strong transcription	Placenta	Placenta
45	chr15:49317400-49321800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:49317400-49321800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:49317400-49322000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:49317400-49324400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:49317600-49322600	Strong transcription	Adipose Nuclei	Adipose
50	chr15:49317600-49327400	Weak transcription	Stomach Mucosa	stomach

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