Variant report

Variant	rs17393193
Chromosome Location	chr15:49332079-49332080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49318649..49320279-chr15:49329361..49332262,2	K562	blood:
2	chr15:49323112..49327106-chr15:49329823..49333093,3	K562	blood:
3	chr15:49328431..49332105-chr15:49337151..49339977,3	MCF-7	breast:
4	chr15:49331050..49334750-chr15:49335997..49340246,5	K562	blood:

Variant related genes	Relation type
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11634901	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11638981	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2413932	0.91[EUR][1000 genomes]
rs34895054	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
5	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
6	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:49319200-49334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:49321000-49336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:49321400-49338000	Weak transcription	Spleen	Spleen
12	chr15:49321800-49336400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:49321800-49336800	Weak transcription	Thymus	Thymus
14	chr15:49322000-49336400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:49322600-49333600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:49327800-49336200	Weak transcription	Fetal Brain Female	brain
17	chr15:49327800-49337200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:49328000-49334600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:49328200-49336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:49328200-49336400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:49328400-49332600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr15:49328400-49334600	Weak transcription	Right Atrium	heart
23	chr15:49328400-49336200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:49328400-49336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:49328400-49336200	Weak transcription	Fetal Brain Male	brain
26	chr15:49328400-49336600	Weak transcription	Aorta	Aorta
27	chr15:49328400-49336600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:49328400-49338000	Weak transcription	Esophagus	oesophagus
29	chr15:49328600-49333400	Weak transcription	GM12878-XiMat	blood
30	chr15:49328600-49333600	Weak transcription	Ovary	ovary
31	chr15:49328600-49334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:49328600-49334400	Weak transcription	Left Ventricle	heart
33	chr15:49328600-49334400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:49328600-49334600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:49328600-49334600	Weak transcription	Fetal Stomach	stomach
36	chr15:49328600-49334600	Weak transcription	Lung	lung
37	chr15:49328600-49336200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:49328600-49336200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr15:49328600-49336400	Weak transcription	HUVEC	blood vessel
40	chr15:49328600-49337400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:49328600-49337400	Weak transcription	Colonic Mucosa	Colon
42	chr15:49328600-49337400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:49328600-49338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:49328600-49338000	Weak transcription	Gastric	stomach
45	chr15:49329000-49332600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:49329000-49332600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:49329200-49333400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:49329200-49334400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:49329200-49334400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:49329200-49335800	Weak transcription	Adipose Nuclei	Adipose

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