Variant report

Variant	rs34895054
Chromosome Location	chr15:49285001-49285002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49283391..49286109-chr15:49287994..49291548,4	K562	blood:

Variant related genes	Relation type
ENSG00000207105	Chromatin interaction
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11634901	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11638981	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17393193	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34895054	SECISBP2L	cis	lung	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49279400-49288800	Strong transcription	HSMM	muscle
4	chr15:49279600-49285200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49280000-49287400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:49280000-49289000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
8	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:49280200-49285200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:49280200-49289200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
13	chr15:49280600-49291200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:49281200-49292800	Strong transcription	NHLF	lung
15	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
19	chr15:49281800-49293000	Strong transcription	Liver	Liver
20	chr15:49282000-49285200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:49282200-49285200	Strong transcription	NH-A	brain
24	chr15:49282200-49287400	Strong transcription	Primary T cells from cord blood	blood
25	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
29	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:49282400-49285200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:49282400-49285800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:49282400-49288600	Weak transcription	Psoas Muscle	Psoas
33	chr15:49282400-49289200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:49282400-49293200	Strong transcription	Fetal Intestine Large	intestine
35	chr15:49282600-49285600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:49282600-49292200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:49282600-49293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:49282600-49293200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr15:49282600-49293200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr15:49282600-49293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:49282800-49285200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:49282800-49285200	Strong transcription	HSMMtube	muscle
43	chr15:49282800-49285400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:49282800-49285800	Strong transcription	Fetal Thymus	thymus
45	chr15:49282800-49287600	Strong transcription	Ovary	ovary
46	chr15:49282800-49293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:49282800-49293400	Strong transcription	Fetal Muscle Leg	muscle
48	chr15:49282800-49333400	Weak transcription	A549	lung
49	chr15:49283000-49288000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:49283000-49288600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links