Variant report

Variant	rs11643215
Chromosome Location	chr16:75729424-75729425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75723045..75725785-chr16:75728359..75730585,2	K562	blood:
2	chr16:75728474..75730726-chr16:75731491..75733375,2	K562	blood:

Variant related genes	Relation type
ENSG00000240199	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1030264	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10871314	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11149842	0.83[CEU][hapmap]
rs12443899	0.85[AMR][1000 genomes]
rs12445389	0.81[AMR][1000 genomes]
rs12596083	0.82[AMR][1000 genomes]
rs12597472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1477401	0.85[JPT][hapmap]
rs17764918	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1865493	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs2059261	0.82[AMR][1000 genomes]
rs2161698	0.85[JPT][hapmap];0.83[YRI][hapmap]
rs2903096	0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35977374	0.83[AMR][1000 genomes]
rs3784929	0.90[CEU][hapmap]
rs41505349	0.90[CEU][hapmap]
rs4633754	0.83[AMR][1000 genomes]
rs4887835	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4887836	0.86[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4887837	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4888448	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4888449	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4888451	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4888452	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4888455	0.82[AMR][1000 genomes]
rs5010692	0.90[CEU][hapmap]
rs56954102	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57208266	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57396453	0.81[AMR][1000 genomes]
rs58091977	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58264015	0.82[AMR][1000 genomes]
rs58533792	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58846463	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59449831	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60775162	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60895247	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61183686	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7186966	0.80[AMR][1000 genomes]
rs7187419	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7192453	0.85[JPT][hapmap]
rs8048533	0.83[AMR][1000 genomes]
rs8048806	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8053219	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs8060972	0.83[CEU][hapmap]
rs9934159	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	esv3390407	chr16:75701870-75751074	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv906930	chr16:75728261-75872464	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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