Variant report

Variant	rs12445389
Chromosome Location	chr16:75701860-75701861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75696333..75698717-chr16:75701380..75703728,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1030264	0.81[AMR][1000 genomes]
rs10871314	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11643215	0.81[AMR][1000 genomes]
rs12443899	0.89[AMR][1000 genomes]
rs12445937	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12446652	0.89[AMR][1000 genomes]
rs12595883	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12596033	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12596083	0.86[AMR][1000 genomes]
rs12596724	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12598094	0.89[AMR][1000 genomes]
rs12598741	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12598751	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12599212	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12599322	0.89[AMR][1000 genomes]
rs12600066	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12600271	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16940253	0.84[AMR][1000 genomes]
rs16940467	0.83[AMR][1000 genomes]
rs17697211	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17764821	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17764918	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1812507	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1836547	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1979717	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2059261	0.86[AMR][1000 genomes]
rs2164245	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2242406	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2278469	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2289063	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2903096	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35977374	0.85[AMR][1000 genomes]
rs3736377	0.81[AMR][1000 genomes]
rs3743599	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3743601	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3743603	0.89[AMR][1000 genomes]
rs3743605	0.83[AMR][1000 genomes]
rs3851741	0.80[AMR][1000 genomes]
rs4633754	0.85[AMR][1000 genomes]
rs4887833	0.81[AMR][1000 genomes]
rs4887835	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4887836	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4887837	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4888436	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4888437	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4888440	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4888442	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4888444	0.91[EUR][1000 genomes]
rs4888448	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4888449	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4888451	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4888455	0.86[AMR][1000 genomes]
rs56954102	0.89[AMR][1000 genomes]
rs57208266	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57252551	0.84[AMR][1000 genomes]
rs58091977	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58264015	0.86[AMR][1000 genomes]
rs58273293	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58508930	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58533792	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58597869	0.88[AMR][1000 genomes]
rs58673511	0.81[AMR][1000 genomes]
rs58719566	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58846463	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59449831	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59907199	0.82[AMR][1000 genomes]
rs60393074	0.89[AMR][1000 genomes]
rs60952428	0.89[AMR][1000 genomes]
rs61036571	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61078946	0.83[AMR][1000 genomes]
rs61183686	0.92[AMR][1000 genomes]
rs61537885	0.91[EUR][1000 genomes]
rs6564268	0.89[AMR][1000 genomes]
rs7187419	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7187672	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7193066	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7195338	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs719574	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7206799	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74027438	0.83[AMR][1000 genomes]
rs7499759	0.88[AMR][1000 genomes]
rs8048533	0.85[AMR][1000 genomes]
rs8051713	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8053219	0.84[AMR][1000 genomes]
rs8055329	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8056968	0.88[AMR][1000 genomes]
rs8192516	0.88[AMR][1000 genomes]
rs963820	0.86[AMR][1000 genomes]
rs9788802	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75692400-75704000	Weak transcription	Psoas Muscle	Psoas
2	chr16:75693800-75723200	Weak transcription	Ovary	ovary
3	chr16:75694400-75705800	Weak transcription	Pancreas	Pancrea
4	chr16:75695000-75702200	Weak transcription	Spleen	Spleen
5	chr16:75695600-75704600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr16:75695600-75713200	Weak transcription	Right Atrium	heart
7	chr16:75696000-75706400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr16:75696000-75713200	Weak transcription	Left Ventricle	heart
9	chr16:75696000-75716200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:75696200-75712400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr16:75696400-75706000	Weak transcription	Aorta	Aorta

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