Variant report

Variant	rs3736377
Chromosome Location	chr16:75566879-75566880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75564094..75567077-chr16:75588072..75589709,2	K562	blood:
2	chr16:75566186..75568910-chr16:75569034..75571524,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205084	Chromatin interaction
ENSG00000135702	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs12445389	0.81[AMR][1000 genomes]
rs12445937	0.82[AMR][1000 genomes]
rs12446652	0.90[AMR][1000 genomes]
rs12595883	0.81[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12596033	0.86[AMR][1000 genomes]
rs12596724	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12596796	0.83[AFR][1000 genomes]
rs12597771	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12598094	0.96[MEX][hapmap];0.90[AMR][1000 genomes]
rs12598741	0.91[AMR][1000 genomes]
rs12598751	0.92[CHD][hapmap];0.87[MEX][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12599212	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12599322	0.96[MEX][hapmap];0.90[AMR][1000 genomes]
rs12600066	0.90[AMR][1000 genomes]
rs12600271	0.90[AMR][1000 genomes]
rs16940253	0.96[MEX][hapmap];0.85[AMR][1000 genomes]
rs16940467	0.84[AMR][1000 genomes]
rs17697211	0.87[AMR][1000 genomes]
rs17764821	0.83[AMR][1000 genomes]
rs1812507	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1836547	0.84[AMR][1000 genomes]
rs1979717	0.96[MEX][hapmap];0.86[AMR][1000 genomes]
rs2164245	0.87[AMR][1000 genomes]
rs2242406	1.00[ASW][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2278469	0.87[AMR][1000 genomes]
rs2289063	0.96[MEX][hapmap];0.86[AMR][1000 genomes]
rs2454867	0.81[ASN][1000 genomes]
rs2550896	0.82[ASN][1000 genomes]
rs2738792	0.85[ASN][1000 genomes]
rs364220	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3743599	1.00[ASW][hapmap];0.96[MEX][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3743601	0.88[AMR][1000 genomes]
rs3743603	0.91[MEX][hapmap];0.90[AMR][1000 genomes]
rs3743605	0.84[AMR][1000 genomes]
rs3784929	0.80[MEX][hapmap]
rs3826108	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3851741	1.00[ASW][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41505349	0.80[MEX][hapmap]
rs4482320	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887833	0.82[AMR][1000 genomes]
rs4888436	0.90[AMR][1000 genomes]
rs4888437	0.90[AMR][1000 genomes]
rs4888440	0.86[AMR][1000 genomes]
rs4888442	0.87[AMR][1000 genomes]
rs5010692	0.80[MEX][hapmap]
rs57252551	0.85[AMR][1000 genomes]
rs58273293	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58508930	0.89[AMR][1000 genomes]
rs58597869	0.89[AMR][1000 genomes]
rs58673511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58719566	0.90[AMR][1000 genomes]
rs59907199	0.83[AMR][1000 genomes]
rs60393074	0.90[AMR][1000 genomes]
rs60952428	0.83[AMR][1000 genomes]
rs61036571	0.87[AMR][1000 genomes]
rs61164110	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61539645	0.91[ASN][1000 genomes]
rs6564268	0.90[AMR][1000 genomes]
rs7187672	0.87[AMR][1000 genomes]
rs7193066	0.96[MEX][hapmap];0.83[AMR][1000 genomes]
rs7195338	0.86[AMR][1000 genomes]
rs719574	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7206799	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs74027438	0.84[AMR][1000 genomes]
rs7499759	0.91[AMR][1000 genomes]
rs8051713	0.87[AMR][1000 genomes]
rs8056968	0.89[AMR][1000 genomes]
rs8192516	0.89[AMR][1000 genomes]
rs963820	0.95[MEX][hapmap]
rs9788802	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9934159	0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
5	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv525955	chr16:75473332-75628345	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
8	nsv457521	chr16:75487758-75603925	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
9	nsv572979	chr16:75487758-75603925	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
10	nsv532561	chr16:75519574-75636977	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
11	nsv572981	chr16:75521030-75581160	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv1059777	chr16:75522954-75572713	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv516675	chr16:75528511-75572012	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv906914	chr16:75528511-75573884	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
15	nsv906915	chr16:75528511-75574729	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv906916	chr16:75528511-75579233	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
17	nsv906917	chr16:75528511-75581160	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	esv3509911	chr16:75531267-75573060	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
19	esv3509912	chr16:75531267-75573060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
20	esv2647265	chr16:75532031-75573468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
21	nsv906918	chr16:75532044-75573884	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
22	nsv906919	chr16:75532044-75579233	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
23	esv3430822	chr16:75532230-75572596	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
24	esv3417877	chr16:75532542-75572654	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
25	nsv1062535	chr16:75533659-75575997	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
26	nsv1065709	chr16:75533659-75583008	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
27	esv2763141	chr16:75533671-75575998	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
28	nsv1060637	chr16:75534278-75575997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
29	nsv1055697	chr16:75535360-75575997	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
30	nsv9461	chr16:75536123-75576182	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
31	nsv1057506	chr16:75536272-75575997	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
32	nsv827748	chr16:75538442-75580713	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
33	nsv870450	chr16:75538457-75591359	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	41 gene(s)	inside rSNPs	diseases
34	esv3415643	chr16:75538811-75579509	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
35	nsv827749	chr16:75539113-75579358	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
36	nsv827750	chr16:75539336-75579358	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
37	nsv1056522	chr16:75539396-75575997	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
38	esv2762311	chr16:75539408-75575998	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
39	esv2830028	chr16:75539436-75571923	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
40	nsv906920	chr16:75539436-75573884	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
41	nsv572982	chr16:75539436-75574521	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
42	nsv572983	chr16:75539436-75575410	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
43	esv3693226	chr16:75539436-75575997	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
44	nsv572984	chr16:75539436-75579233	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
45	nsv906921	chr16:75539436-75579233	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
46	nsv906922	chr16:75539436-75580117	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
47	nsv572985	chr16:75539436-75581160	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
48	nsv906923	chr16:75539436-75581160	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
49	nsv906924	chr16:75539436-75583499	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
50	nsv457522	chr16:75539885-75574424	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736377	NQO2	trans	lymphoblastoid	seeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75551200-75589200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:75551400-75572200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr16:75551400-75584000	Weak transcription	Right Atrium	heart
4	chr16:75551600-75568400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr16:75551600-75575800	Weak transcription	Brain Hippocampus Middle	brain
6	chr16:75551800-75572400	Weak transcription	Right Ventricle	heart
7	chr16:75551800-75578000	Weak transcription	Fetal Brain Female	brain
8	chr16:75557800-75572400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr16:75558600-75572000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr16:75560600-75568600	Weak transcription	Fetal Muscle Leg	muscle
11	chr16:75561400-75578000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr16:75561600-75569200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:75561800-75579400	Weak transcription	Gastric	stomach
14	chr16:75562800-75567200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr16:75562800-75567600	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr16:75563000-75567000	Strong transcription	Brain Anterior Caudate	brain
17	chr16:75563200-75575200	Weak transcription	Brain Angular Gyrus	brain
18	chr16:75563400-75568800	Weak transcription	Fetal Stomach	stomach
19	chr16:75564000-75568800	Weak transcription	Colonic Mucosa	Colon
20	chr16:75564000-75573800	Weak transcription	Ovary	ovary
21	chr16:75564000-75578000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr16:75564200-75568400	Weak transcription	Fetal Intestine Large	intestine
23	chr16:75564200-75572400	Weak transcription	Brain Germinal Matrix	brain
24	chr16:75564200-75572600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr16:75564200-75589200	Weak transcription	Lung	lung
26	chr16:75564400-75569000	Weak transcription	Small Intestine	intestine
27	chr16:75564800-75575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr16:75566400-75567000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr16:75566400-75567200	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
30	chr16:75566600-75568800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:75566800-75567200	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr16:75566800-75567400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum

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