Variant report

Variant	rs11655047
Chromosome Location	chr17:46101949-46101950
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46101739..46105145-chr17:46207358..46210173,3	MCF-7	breast:
2	chr17:46101075..46105793-chr17:46203518..46208640,6	MCF-7	breast:
3	chr17:46101220..46105616-chr17:46211133..46214847,5	K562	blood:
4	chr17:46101105..46103600-chr17:46138734..46141619,2	K562	blood:
5	chr17:46100290..46104941-chr17:46183793..46186470,6	MCF-7	breast:
6	chr17:46035894..46038484-chr17:46099628..46103418,4	MCF-7	breast:
7	chr17:46029177..46031751-chr17:46099712..46102366,3	MCF-7	breast:
8	chr17:46072676..46074686-chr17:46100526..46102063,2	MCF-7	breast:
9	chr17:45973640..45975276-chr17:46101393..46103848,2	MCF-7	breast:
10	chr17:46101392..46102971-chr17:46203162..46205117,2	MCF-7	breast:
11	chr17:46101875..46102563-chr19:18133146..18133778,2	Hela-S3	cervix:
12	chr17:45960557..45963296-chr17:46100830..46102768,2	MCF-7	breast:
13	chr17:46024703..46026313-chr17:46100514..46102260,2	MCF-7	breast:
14	chr17:46100592..46104586-chr17:46183324..46186520,4	K562	blood:
15	chr12:14928107..14928898-chr17:46101875..46102670,2	Hela-S3	cervix:
16	chr17:46094604..46097136-chr17:46099608..46102510,2	K562	blood:
17	chr17:46100886..46103222-chr17:46270913..46273515,2	MCF-7	breast:
18	chr17:46101312..46103922-chr17:46212522..46214057,2	MCF-7	breast:
19	chr17:46047240..46049948-chr17:46101636..46104344,3	MCF-7	breast:
20	chr17:46037638..46039949-chr17:46100422..46103113,2	MCF-7	breast:
21	chr17:46033388..46035885-chr17:46101144..46103907,2	MCF-7	breast:
22	chr17:46101261..46104972-chr17:46659979..46662985,3	K562	blood:
23	chr17:46100824..46102860-chr17:46184940..46187814,2	MCF-7	breast:
24	chr17:46101351..46104299-chr17:46183324..46186063,2	K562	blood:
25	chr17:46101917..46105138-chr17:46176105..46179935,5	K562	blood:
26	chr17:46046874..46048813-chr17:46100923..46104280,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000264701	Chromatin interaction
ENSG00000108465	Chromatin interaction
ENSG00000264019	Chromatin interaction
ENSG00000108468	Chromatin interaction
ENSG00000002919	Chromatin interaction
ENSG00000268032	Chromatin interaction
ENSG00000167183	Chromatin interaction
ENSG00000141293	Chromatin interaction
ENSG00000120093	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1043603	0.81[AMR][1000 genomes]
rs11654627	0.81[AMR][1000 genomes]
rs12945362	0.82[AFR][1000 genomes]
rs34033530	0.86[AFR][1000 genomes]
rs34737931	0.86[AFR][1000 genomes]
rs35928933	0.82[AFR][1000 genomes]
rs71377338	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46100400-46103400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr17:46100400-46103800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr17:46100600-46102000	Bivalent Enhancer	Fetal Brain Male	brain
4	chr17:46100600-46102000	Flanking Bivalent TSS/Enh	Thymus	Thymus
5	chr17:46100600-46102200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr17:46100600-46102600	Flanking Bivalent TSS/Enh	HepG2	liver
7	chr17:46100600-46103000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr17:46100600-46103200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:46100800-46102000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr17:46100800-46102000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr17:46100800-46102000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46100800-46102000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr17:46100800-46102000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:46100800-46102000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
15	chr17:46100800-46102000	Flanking Active TSS	Esophagus	oesophagus
16	chr17:46100800-46102000	Flanking Active TSS	Pancreas	Pancrea
17	chr17:46100800-46102200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:46100800-46102200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr17:46100800-46102200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr17:46100800-46102200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:46100800-46102200	Flanking Active TSS	Placenta	Placenta
22	chr17:46100800-46102200	Flanking Active TSS	NHLF	lung
23	chr17:46100800-46102400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr17:46100800-46102400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr17:46100800-46102400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr17:46100800-46102400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr17:46100800-46102400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr17:46100800-46102400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr17:46100800-46102400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr17:46100800-46102400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr17:46100800-46102400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr17:46100800-46102400	Enhancers	Gastric	stomach
33	chr17:46100800-46102400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr17:46100800-46102400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr17:46100800-46102400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr17:46100800-46102400	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr17:46100800-46102400	Flanking Active TSS	GM12878-XiMat	blood
38	chr17:46100800-46102400	Flanking Active TSS	HUVEC	blood vessel
39	chr17:46100800-46102400	Flanking Active TSS	NH-A	brain
40	chr17:46100800-46102600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr17:46100800-46102600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr17:46100800-46102600	Flanking Active TSS	HSMM	muscle
43	chr17:46100800-46103000	Active TSS	H9 Cell Line	embryonic stem cell
44	chr17:46100800-46103200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr17:46100800-46103200	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr17:46101000-46102000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:46101000-46102000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr17:46101000-46102000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
49	chr17:46101000-46102000	Bivalent/Poised TSS	Fetal Kidney	kidney
50	chr17:46101000-46102200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--

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