Variant report

Variant	rs34737931
Chromosome Location	chr17:46102699-46102700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46101739..46105145-chr17:46207358..46210173,3	MCF-7	breast:
2	chr17:46101075..46105793-chr17:46203518..46208640,6	MCF-7	breast:
3	chr17:46102017..46103055-chr17:46695675..46696647,5	K562	blood:
4	chr17:46101220..46105616-chr17:46211133..46214847,5	K562	blood:
5	chr17:46101105..46103600-chr17:46138734..46141619,2	K562	blood:
6	chr17:46100290..46104941-chr17:46183793..46186470,6	MCF-7	breast:
7	chr17:46035894..46038484-chr17:46099628..46103418,4	MCF-7	breast:
8	chr17:46102069..46103134-chr17:46150737..46152351,16	K562	blood:
9	chr17:46102233..46104443-chr17:46148232..46151120,2	K562	blood:
10	chr17:46102208..46103015-chr17:46955283..46956936,4	K562	blood:
11	chr17:45973640..45975276-chr17:46101393..46103848,2	MCF-7	breast:
12	chr17:46102177..46103619-chr17:46151450..46152271,5	MCF-7	breast:
13	chr17:46101392..46102971-chr17:46203162..46205117,2	MCF-7	breast:
14	chr17:45960557..45963296-chr17:46100830..46102768,2	MCF-7	breast:
15	chr17:46102373..46103175-chr17:46695748..46696490,3	MCF-7	breast:
16	chr17:46100592..46104586-chr17:46183324..46186520,4	K562	blood:
17	chr17:46102447..46103014-chr17:46258042..46258857,2	MCF-7	breast:
18	chr17:46055379..46055989-chr17:46102135..46102792,2	K562	blood:
19	chr17:46100886..46103222-chr17:46270913..46273515,2	MCF-7	breast:
20	chr17:46102152..46102814-chr17:46208435..46209175,3	MCF-7	breast:
21	chr17:46102222..46103170-chr17:46208285..46209232,6	K562	blood:
22	chr17:46101312..46103922-chr17:46212522..46214057,2	MCF-7	breast:
23	chr17:46047240..46049948-chr17:46101636..46104344,3	MCF-7	breast:
24	chr17:46037638..46039949-chr17:46100422..46103113,2	MCF-7	breast:
25	chr17:46033388..46035885-chr17:46101144..46103907,2	MCF-7	breast:
26	chr17:46102567..46103108-chr17:46208472..46209147,2	MCF-7	breast:
27	chr17:46102421..46103102-chr17:46174635..46175180,2	MCF-7	breast:
28	chr17:46101261..46104972-chr17:46659979..46662985,3	K562	blood:
29	chr17:46100824..46102860-chr17:46184940..46187814,2	MCF-7	breast:
30	chr17:46102299..46104272-chr17:46156219..46158747,2	MCF-7	breast:
31	chr17:46070659..46072225-chr17:46102465..46104720,2	K562	blood:
32	chr17:46101351..46104299-chr17:46183324..46186063,2	K562	blood:
33	chr17:46101917..46105138-chr17:46176105..46179935,5	K562	blood:
34	chr17:46046874..46048813-chr17:46100923..46104280,3	MCF-7	breast:
35	chr17:46088611..46089553-chr17:46102607..46103180,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167183	Chromatin interaction
ENSG00000108465	Chromatin interaction
ENSG00000108468	Chromatin interaction
ENSG00000141293	Chromatin interaction
ENSG00000002919	Chromatin interaction
ENSG00000120093	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11655047	0.86[AFR][1000 genomes]
rs12945362	0.95[AFR][1000 genomes]
rs34033530	1.00[AFR][1000 genomes]
rs35711165	0.81[AFR][1000 genomes]
rs35928933	0.95[AFR][1000 genomes]
rs71377338	0.95[AFR][1000 genomes]
rs71377341	0.85[AFR][1000 genomes]
rs73985447	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46100400-46103400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr17:46100400-46103800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr17:46100600-46103000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr17:46100600-46103200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:46100800-46103000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr17:46100800-46103200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr17:46100800-46103200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr17:46101000-46103200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr17:46101200-46103200	Active TSS	Psoas Muscle	Psoas
10	chr17:46101400-46102800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr17:46101400-46103000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr17:46101400-46103200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46101400-46103400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr17:46101400-46104200	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr17:46101800-46103000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:46101800-46103000	Active TSS	Right Atrium	heart
17	chr17:46101800-46103200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr17:46101800-46103200	Weak transcription	Aorta	Aorta
19	chr17:46102000-46102800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:46102000-46102800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr17:46102000-46102800	Bivalent/Poised TSS	Thymus	Thymus
22	chr17:46102000-46102800	Enhancers	Spleen	Spleen
23	chr17:46102000-46103000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr17:46102000-46103000	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr17:46102000-46103000	Active TSS	Right Ventricle	heart
26	chr17:46102000-46103000	Active TSS	Hela-S3	cervix
27	chr17:46102000-46103000	Active TSS	HSMMtube	muscle
28	chr17:46102000-46103000	Active TSS	NHDF-Ad	bronchial
29	chr17:46102000-46103200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr17:46102200-46102800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:46102200-46102800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:46102200-46102800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:46102200-46102800	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr17:46102200-46102800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:46102200-46102800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:46102200-46102800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr17:46102200-46102800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr17:46102200-46102800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr17:46102200-46102800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr17:46102200-46102800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr17:46102200-46102800	Active TSS	Colonic Mucosa	Colon
42	chr17:46102200-46102800	Enhancers	Esophagus	oesophagus
43	chr17:46102200-46102800	Active TSS	Placenta	Placenta
44	chr17:46102200-46102800	Active TSS	Left Ventricle	heart
45	chr17:46102200-46102800	Weak transcription	Lung	lung
46	chr17:46102200-46102800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr17:46102200-46102800	Active TSS	K562	blood
48	chr17:46102200-46102800	Active TSS	NHEK	skin
49	chr17:46102200-46103000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
50	chr17:46102200-46103000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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