Variant report

Variant	rs11656130
Chromosome Location	chr17:67400446-67400447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67365681..67368085-chr17:67398794..67400543,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1622309	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963458	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2034100	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2440132	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2592204	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2592207	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2592208	0.81[TSI][hapmap]
rs333924	0.97[ASN][1000 genomes]
rs333925	0.97[ASN][1000 genomes]
rs333926	0.97[ASN][1000 genomes]
rs333927	0.97[ASN][1000 genomes]
rs498637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529152	0.93[ASN][1000 genomes]
rs537706	0.97[ASN][1000 genomes]
rs555703	0.93[ASN][1000 genomes]
rs578695	0.95[ASN][1000 genomes]
rs707248	0.85[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs732322	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs817097	0.95[ASN][1000 genomes]
rs817541	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs817542	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs817544	0.85[CEU][hapmap];0.94[GIH][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs817547	0.85[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs817548	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs817549	0.85[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs817550	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs817558	0.84[EUR][1000 genomes]
rs817559	0.81[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67398800-67401400	Weak transcription	Placenta	Placenta
2	chr17:67400400-67400800	Flanking Active TSS	Hela-S3	cervix
3	chr17:67400400-67401000	Flanking Active TSS	A549	lung

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