Variant report

Variant	rs1963458
Chromosome Location	chr17:67412362-67412363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67323434..67325106-chr17:67412103..67414795,2	MCF-7	breast:
2	chr17:67411772..67413829-chr17:67415713..67418536,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11656130	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1622309	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2034100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440132	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2592204	0.83[EUR][1000 genomes]
rs2592207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498637	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs707248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732322	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817542	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817543	0.90[CEU][hapmap]
rs817544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817545	0.89[CEU][hapmap]
rs817546	0.89[CEU][hapmap]
rs817547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817555	1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs817558	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817559	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817564	1.00[JPT][hapmap]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67409800-67413200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr17:67410200-67412400	Active TSS	Colonic Mucosa	Colon
3	chr17:67410400-67412400	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr17:67410400-67412400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr17:67410400-67412400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:67410400-67412400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:67410400-67412400	Active TSS	Fetal Intestine Small	intestine
8	chr17:67410400-67412400	Active TSS	Fetal Kidney	kidney
9	chr17:67410400-67412400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr17:67410400-67412600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr17:67410400-67412600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr17:67410400-67412600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:67410400-67412600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr17:67410400-67412600	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr17:67410400-67412600	Active TSS	Fetal Muscle Trunk	muscle
16	chr17:67410400-67412600	Active TSS	Right Atrium	heart
17	chr17:67410400-67413000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr17:67410400-67413000	Active TSS	Psoas Muscle	Psoas
19	chr17:67410400-67413000	Flanking Active TSS	HUVEC	blood vessel
20	chr17:67410400-67413200	Active TSS	H1 Cell Line	embryonic stem cell
21	chr17:67410400-67413200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:67410400-67414000	Active TSS	Rectal Smooth Muscle	rectum
23	chr17:67410400-67414200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr17:67410400-67414200	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr17:67410400-67415400	Active TSS	GM12878-XiMat	blood
26	chr17:67410800-67412600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:67410800-67412800	Active TSS	Fetal Thymus	thymus
28	chr17:67411000-67412400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr17:67411000-67412600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr17:67411000-67412600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr17:67411000-67413000	Active TSS	Primary T cells fromperipheralblood	blood
32	chr17:67411200-67412600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr17:67411200-67412600	Flanking Active TSS	Dnd41	blood
34	chr17:67411200-67418600	Weak transcription	Spleen	Spleen
35	chr17:67411400-67412400	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr17:67411400-67412600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr17:67411400-67413800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr17:67411400-67413800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr17:67411400-67414200	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr17:67411400-67425000	Weak transcription	Pancreas	Pancrea
41	chr17:67411400-67425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr17:67411600-67412400	Flanking Active TSS	A549	lung
43	chr17:67411600-67412600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr17:67411600-67413200	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr17:67411600-67413800	Weak transcription	Ovary	ovary
46	chr17:67411800-67412400	Enhancers	HMEC	breast
47	chr17:67411800-67412600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr17:67411800-67412600	Enhancers	Primary B cells from peripheral blood	blood
49	chr17:67411800-67412600	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr17:67411800-67412800	Flanking Active TSS	Colon Smooth Muscle	Colon

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