Variant report

Variant	rs817543
Chromosome Location	chr17:67415277-67415278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1963458	0.90[CEU][hapmap]
rs2034100	0.90[CEU][hapmap]
rs2592207	0.90[CEU][hapmap]
rs2592208	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2592209	0.82[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs333910	0.84[ASN][1000 genomes]
rs333916	0.82[CHB][hapmap]
rs333917	0.82[CHB][hapmap]
rs4968791	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6501323	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs707246	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs707247	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs707248	0.89[CEU][hapmap]
rs732322	0.86[CEU][hapmap]
rs817541	0.90[CEU][hapmap]
rs817544	0.89[CEU][hapmap]
rs817545	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs817547	0.89[CEU][hapmap]
rs817549	0.89[CEU][hapmap]
rs817550	0.90[CEU][hapmap]
rs817554	0.87[ASN][1000 genomes]
rs817556	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs817557	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs817559	0.86[CEU][hapmap]
rs817565	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs817566	0.91[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67410400-67415400	Active TSS	GM12878-XiMat	blood
2	chr17:67411200-67418600	Weak transcription	Spleen	Spleen
3	chr17:67411400-67425000	Weak transcription	Pancreas	Pancrea
4	chr17:67411400-67425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:67412400-67415400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr17:67412600-67419000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:67412600-67419200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr17:67413000-67415800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:67413200-67415600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr17:67413200-67417600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:67413200-67418000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr17:67413200-67419400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:67413200-67419600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr17:67413400-67415400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr17:67413400-67419400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr17:67413800-67419400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr17:67414000-67416800	Weak transcription	Brain Substantia Nigra	brain
18	chr17:67414000-67418800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr17:67414000-67419400	Weak transcription	Fetal Thymus	thymus
20	chr17:67414000-67419400	Weak transcription	Small Intestine	intestine
21	chr17:67414000-67419600	Weak transcription	Thymus	Thymus
22	chr17:67414000-67424200	Weak transcription	Fetal Muscle Leg	muscle
23	chr17:67414000-67429600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:67414000-67429800	Weak transcription	Brain Hippocampus Middle	brain
25	chr17:67414200-67418600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr17:67414200-67420000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr17:67414400-67415400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr17:67414400-67416800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr17:67414400-67417000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr17:67414400-67419400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr17:67414400-67419400	Weak transcription	Primary T cells from cord blood	blood
32	chr17:67414400-67419400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:67414400-67419400	Weak transcription	NH-A	brain
34	chr17:67414400-67419600	Weak transcription	Psoas Muscle	Psoas
35	chr17:67414400-67419800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr17:67414400-67420200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr17:67414400-67420600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr17:67414400-67421200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:67414400-67421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr17:67414400-67424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr17:67414400-67427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr17:67414400-67429400	Weak transcription	Fetal Stomach	stomach
43	chr17:67414400-67430400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr17:67414400-67430600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:67414600-67415600	Enhancers	Hela-S3	cervix
46	chr17:67414600-67416600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr17:67414600-67419400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr17:67414600-67421600	Weak transcription	A549	lung
49	chr17:67414600-67422400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr17:67414800-67415600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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